Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HCH_RS27820 Genome accession   NC_007645
Coordinates   6326780..6327412 (-) Length   210 a.a.
NCBI ID   WP_011399891.1    Uniprot ID   Q2S941
Organism   Hahella chejuensis KCTC 2396     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6321780..6332412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCH_RS27790 (HCH_06180) - 6321894..6322661 (+) 768 WP_049781115.1 nucleotidyltransferase family protein -
  HCH_RS27795 (HCH_06182) - 6322687..6323280 (+) 594 WP_011399884.1 D-sedoheptulose-7-phosphate isomerase -
  HCH_RS27800 (HCH_06183) - 6323314..6323970 (+) 657 WP_011399885.1 hypothetical protein -
  HCH_RS34020 (HCH_06184) - 6324346..6324573 (-) 228 WP_011399886.1 hypothetical protein -
  HCH_RS27805 (HCH_06186) - 6324644..6325090 (+) 447 WP_011399888.1 hypothetical protein -
  HCH_RS27810 (HCH_06187) - 6325143..6325508 (-) 366 WP_011399889.1 hypothetical protein -
  HCH_RS27815 (HCH_06188) - 6325674..6326669 (-) 996 WP_011399890.1 D-alanine--D-alanine ligase family protein -
  HCH_RS27820 (HCH_06189) ssb 6326780..6327412 (-) 633 WP_011399891.1 single-stranded DNA-binding protein Machinery gene
  HCH_RS27825 (HCH_06190) - 6327428..6328810 (-) 1383 WP_011399892.1 MFS transporter -
  HCH_RS27830 (HCH_06191) uvrA 6328954..6331779 (+) 2826 WP_011399893.1 excinuclease ABC subunit UvrA -
  HCH_RS27835 (HCH_06192) rplQ 6331904..6332293 (-) 390 WP_011399894.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22683.79 Da        Isoelectric Point: 4.9740

>NTDB_id=25213 HCH_RS27820 WP_011399891.1 6326780..6327412(-) (ssb) [Hahella chejuensis KCTC 2396]
MARGVNKVILIGNLGSDPETRYTPSGSAISNLRLATDESYKDKQTGQLVPRTEWHRVVLFGKLAEIAAQYLRKGSKVYIE
GRLQTRKWQDQSGQDRYSTEIVVDMQGQMQMLDSRSGGGGMDNSQGYNDGWQQSAPSGDSYGSAPAAAPAGNYGGASSNN
NYGGAPNNNFGASSGGYSAPNQAQQRPQQPQQPKPPMPEPMDDFDDDIPF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=25213 HCH_RS27820 WP_011399891.1 6326780..6327412(-) (ssb) [Hahella chejuensis KCTC 2396]
ATGGCGCGTGGTGTAAATAAAGTAATTCTAATTGGTAATTTGGGTAGCGATCCGGAAACACGTTATACCCCCTCCGGCAG
CGCGATTTCCAACCTGAGGTTGGCGACTGACGAGAGTTATAAAGACAAGCAGACGGGACAGCTGGTTCCCCGTACGGAAT
GGCACCGGGTTGTGCTGTTCGGTAAGTTGGCGGAGATCGCCGCTCAGTATCTGAGAAAAGGCTCCAAAGTATATATTGAA
GGTCGTCTGCAAACCCGTAAGTGGCAGGATCAGTCTGGGCAGGATCGCTACAGCACTGAGATTGTTGTAGATATGCAAGG
TCAGATGCAGATGCTCGACAGCCGCAGTGGCGGCGGTGGTATGGATAACTCGCAAGGTTACAATGACGGCTGGCAACAAT
CAGCTCCCTCCGGCGACAGTTACGGCAGCGCTCCAGCCGCTGCGCCCGCCGGTAATTATGGCGGCGCTTCTTCCAACAAC
AATTATGGCGGAGCCCCTAACAATAACTTCGGCGCGTCAAGCGGTGGTTACTCCGCTCCGAATCAGGCGCAACAACGCCC
GCAACAGCCTCAGCAACCTAAGCCGCCCATGCCAGAGCCGATGGACGACTTTGACGACGACATTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2S941

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.905

100

0.519
  ssb Glaesserella parasuis strain SC1401

52.174

98.571

0.514
  ssb Neisseria gonorrhoeae MS11

39.437

100

0.4
  ssb Neisseria meningitidis MC58

40.385

99.048

0.4

Multiple sequence alignment