Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DEH83_RS04930 Genome accession   NZ_CP029207
Coordinates   974451..975041 (+) Length   196 a.a.
NCBI ID   WP_255777231.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 969451..980041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS04910 (DEH83_04905) - 970363..970821 (-) 459 WP_255777214.1 DUF3021 domain-containing protein -
  DEH83_RS04915 (DEH83_04910) brsR 970818..971258 (-) 441 WP_037598388.1 LytTR family DNA-binding domain-containing protein Regulator
  DEH83_RS04920 (DEH83_04915) hexB 971505..973451 (+) 1947 WP_006269779.1 DNA mismatch repair endonuclease MutL Machinery gene
  DEH83_RS04925 (DEH83_04920) - 973780..974289 (-) 510 WP_003071502.1 helix-turn-helix domain-containing protein -
  DEH83_RS04930 (DEH83_04925) ruvA 974451..975041 (+) 591 WP_255777231.1 Holliday junction branch migration protein RuvA Machinery gene
  DEH83_RS04935 (DEH83_04930) - 975053..975607 (+) 555 WP_039677797.1 DNA-3-methyladenine glycosylase I -
  DEH83_RS04940 (DEH83_04935) - 975612..976271 (+) 660 WP_255777215.1 CPBP family intramembrane glutamic endopeptidase -
  DEH83_RS04945 (DEH83_04940) - 976343..976900 (+) 558 WP_039677799.1 GNAT family N-acetyltransferase -
  DEH83_RS04950 (DEH83_04945) - 976942..977352 (-) 411 WP_039677800.1 helix-turn-helix domain-containing protein -
  DEH83_RS04955 (DEH83_04950) cinA 977624..978892 (+) 1269 WP_255777216.1 competence/damage-inducible protein A Machinery gene

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21599.02 Da        Isoelectric Point: 5.3389

>NTDB_id=252111 DEH83_RS04930 WP_255777231.1 974451..975041(+) (ruvA) [Streptococcus constellatus strain TCV107]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQINQEIQVFVHQVIREDVQLLYGFGTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGAPAESKVSVQTADNQELEEAMEAML
ALGYRAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=252111 DEH83_RS04930 WP_255777231.1 974451..975041(+) (ruvA) [Streptococcus constellatus strain TCV107]
ATGTACGAATATTTCAAAGGAATTTTAAGTAAAATTACAGCCAAGTATATTGTGGTGGAAGTAGGACAAATTGGCTATAT
TCTTCATGTGGCTAACCCTTATGCCTATTCAGGTCAGATCAATCAAGAAATTCAGGTTTTTGTTCATCAAGTGATCAGAG
AGGATGTGCAGCTCCTCTACGGTTTTGGCACAGAAGATGAAAAACAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGCCCCGTTTCTGCTCTTGCGATAATCGCAGCCGATGATAATGCTGGATTGGTGCAAGCCATTGAGCAGAAAAACATCAC
CTATCTGACCAAGTTTCCCAAGATAGGCAAAAAGACAGCCCAGCAGATGGTGTTGGACTTGGAAGGTAAAGTGGTAGCAA
CAGGTGCGCCAGCGGAAAGCAAGGTTTCCGTCCAGACTGCAGATAACCAGGAGTTGGAAGAAGCCATGGAAGCCATGCTG
GCTCTGGGCTACAGGGCTGCTGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACGACAGATACAGCTGAAAACTACAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

83.249

100

0.837
  ruvA Streptococcus pneumoniae R6

83.249

100

0.837
  ruvA Streptococcus pneumoniae D39

83.249

100

0.837
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.439

100

0.444

Multiple sequence alignment