Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CG478_RS12980 Genome accession   NZ_CP024111
Coordinates   2497741..2498694 (-) Length   317 a.a.
NCBI ID   WP_048724317.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2492741..2503694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG478_RS22700 - 2492986..2493129 (-) 144 WP_157671232.1 hypothetical protein -
  CG478_RS12955 (CG478_012935) thiE 2493175..2493828 (-) 654 WP_011983480.1 thiamine phosphate synthase -
  CG478_RS12960 (CG478_012940) thiM 2493842..2494651 (-) 810 WP_087094392.1 hydroxyethylthiazole kinase -
  CG478_RS12965 (CG478_012945) - 2495006..2495953 (-) 948 WP_011983478.1 siderophore ABC transporter substrate-binding protein -
  CG478_RS12970 (CG478_012950) - 2496028..2496786 (-) 759 WP_011983477.1 ABC transporter ATP-binding protein -
  CG478_RS12975 (CG478_012955) - 2496780..2497751 (-) 972 WP_011983476.1 iron chelate uptake ABC transporter family permease subunit -
  CG478_RS12980 (CG478_012960) ceuB 2497741..2498694 (-) 954 WP_048724317.1 ABC transporter permease Machinery gene
  CG478_RS12985 (CG478_012965) - 2499309..2501498 (+) 2190 WP_087094391.1 DNA topoisomerase III -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35198.46 Da        Isoelectric Point: 10.1714

>NTDB_id=252110 CG478_RS12980 WP_048724317.1 2497741..2498694(-) (ceuB) [Bacillus cytotoxicus strain CH_4]
MKKRYLFIMLIVLSVASIFIGVKDVSLTDVLHWNQEKMQIVFISRLPRLISIIVAGVSLSISGLIMQQLSRNKFVSPTTA
GTMDSAKLGVLVSLMLFTTASPLEKMFIAFIFALAGTFLFMQILKRIKFKDAIFIPLVGIMFGNIISSITTFFAYKYDLI
QNINSWLQGDFSMIMKGRYEILYFSIPLVIIAFLYANRFTVAGMGEDFAANLGMNYNRVLNIGLIIVSLISALVVLTVGM
IPFLGLIIPNIVSIYRGDHLKNSLPHTALLGAVFVLACDILGRVVIYPYEISIGLTVGVIGSGIFLYLLMRRNAYAT

Nucleotide


Download         Length: 954 bp        

>NTDB_id=252110 CG478_RS12980 WP_048724317.1 2497741..2498694(-) (ceuB) [Bacillus cytotoxicus strain CH_4]
ATGAAAAAAAGATATTTATTTATCATGCTTATTGTTTTATCGGTTGCATCTATTTTTATTGGTGTAAAAGATGTGAGTCT
AACAGATGTTTTGCATTGGAATCAAGAGAAAATGCAAATTGTATTTATCAGTAGATTACCACGTCTCATTAGTATTATTG
TTGCTGGTGTCAGTTTAAGTATAAGTGGTTTAATTATGCAGCAACTGAGCAGAAATAAGTTTGTATCTCCAACAACTGCG
GGAACGATGGATAGTGCAAAGTTGGGCGTTTTAGTCTCCTTAATGTTATTTACGACAGCAAGCCCGCTTGAAAAAATGTT
TATCGCATTTATTTTTGCGCTAGCTGGTACATTTTTGTTTATGCAAATTTTAAAGCGAATTAAATTTAAAGATGCCATTT
TTATTCCGCTTGTTGGAATTATGTTTGGAAACATTATTAGTTCCATCACAACATTTTTTGCTTATAAATATGATTTAATT
CAAAATATTAATTCGTGGCTACAAGGTGACTTTTCAATGATTATGAAGGGGAGATATGAGATCTTATATTTCAGTATTCC
GCTTGTAATCATCGCCTTTTTATATGCAAATCGTTTTACCGTTGCTGGAATGGGGGAAGATTTTGCTGCGAATTTAGGAA
TGAATTACAATCGAGTGCTAAATATTGGGCTTATTATCGTTTCTCTCATCTCTGCATTAGTTGTTTTAACTGTTGGGATG
ATTCCATTTTTAGGACTTATTATTCCAAATATCGTTTCAATTTATCGCGGAGATCATTTGAAAAATAGTTTACCTCATAC
TGCCTTGTTAGGAGCTGTTTTTGTACTAGCTTGCGATATACTTGGTAGGGTCGTAATTTATCCGTATGAAATTTCGATTG
GTCTTACAGTAGGAGTGATCGGAAGCGGAATCTTCCTTTATTTATTAATGAGGAGAAACGCATATGCAACATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536

Multiple sequence alignment