Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FORC73_RS12455 Genome accession   NZ_CP024082
Coordinates   2659910..2660443 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain FORC_073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2654910..2665443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS12435 (FORC73_2349) - 2655365..2655682 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  FORC73_RS12440 (FORC73_2350) gspM 2655675..2656325 (-) 651 WP_000835149.1 type II secretion system protein GspM -
  FORC73_RS12445 (FORC73_2351) - 2656322..2657761 (-) 1440 WP_032481367.1 PilN domain-containing protein -
  FORC73_RS12450 (FORC73_2352) csrD 2657774..2659732 (-) 1959 WP_000216145.1 RNase E specificity factor CsrD -
  FORC73_RS12455 (FORC73_2353) ssb 2659910..2660443 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  FORC73_RS12460 (FORC73_2354) qstR 2660735..2661379 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  FORC73_RS12465 (FORC73_2355) galU 2661552..2662424 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FORC73_RS12470 (FORC73_2356) uvrA 2662580..2665402 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=251747 FORC73_RS12455 WP_000168287.1 2659910..2660443(-) (ssb) [Vibrio cholerae strain FORC_073]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=251747 FORC73_RS12455 WP_000168287.1 2659910..2660443(-) (ssb) [Vibrio cholerae strain FORC_073]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486

Multiple sequence alignment