Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CRN81_RS18580 Genome accession   NZ_CP024028
Coordinates   4000826..4002328 (-) Length   500 a.a.
NCBI ID   WP_099427625.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain CV1192     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3995826..4007328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN81_RS18560 (CRN81_18555) cyoA 3997447..3998388 (-) 942 WP_011137543.1 ubiquinol oxidase subunit II -
  CRN81_RS18570 (CRN81_18565) - 3999365..3999976 (-) 612 WP_011137545.1 thiol:disulfide interchange protein DsbA/DsbL -
  CRN81_RS18575 (CRN81_18570) - 4000008..4000760 (-) 753 WP_099427624.1 SPOR domain-containing protein -
  CRN81_RS18580 (CRN81_18575) comM 4000826..4002328 (-) 1503 WP_099427625.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CRN81_RS18585 (CRN81_18580) - 4002334..4002621 (-) 288 WP_011137548.1 accessory factor UbiK family protein -
  CRN81_RS18590 (CRN81_18585) glnK 4002929..4003267 (+) 339 WP_011137549.1 P-II family nitrogen regulator -
  CRN81_RS18595 (CRN81_18590) - 4003295..4004605 (+) 1311 WP_099427626.1 ammonium transporter -
  CRN81_RS18600 (CRN81_18595) - 4004722..4005150 (-) 429 WP_011137551.1 ClpXP protease specificity-enhancing factor -
  CRN81_RS18605 (CRN81_18600) - 4005160..4005762 (-) 603 WP_011137552.1 glutathione S-transferase N-terminal domain-containing protein -
  CRN81_RS18610 (CRN81_18605) - 4005914..4006678 (-) 765 WP_011137553.1 cytochrome c1 -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52718.46 Da        Isoelectric Point: 7.7229

>NTDB_id=251311 CRN81_RS18580 WP_099427625.1 4000826..4002328(-) (comM) [Chromobacterium violaceum strain CV1192]
MTLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEFPARKITVNLAPADLPKDSGR
FDLPIAIGILLASGQVKNDDIARFEFAGELALSGAVRPVRGALAMACQCHAAGRAFVLPADSAGEAAVVGGAAVYAVKSL
PQACAFLNGLQPLEPFAGAIGGEWPNYPDLADVKGQSIARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPPLSET
EALESAAVQSLGSQGFQPGRWRVRPFRSPHHTASAVALVGGGSEPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLES
GMIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQCTPEQVARYRGKISGPLLDRIDLQVEVPALTADELQRSAA
GEASEAVRHRVLTARDRQLARQGGLNAALQGAELERHCLGDEQALAVLAKALQQLGLSARAYHRILRVSRTIADLQGAET
INRNHVLQAIQLRRVMQSGA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=251311 CRN81_RS18580 WP_099427625.1 4000826..4002328(-) (comM) [Chromobacterium violaceum strain CV1192]
ATGACGCTGGCGGTGGTGGCGAGCAGGGCGTTGTCCGGGCTTGACGCCCCGGAGGTGGCCGTCGAGGTCCACCTGGCCAA
CGGCCTGCCCGCGTTCAACATCGTCGGCCTACCCGACACCGAGGTGAAGGAAAGCCGCGATCGCGTCCGCGCCGCCATTC
TCACCTCGGGCTTCGAATTTCCCGCCCGCAAGATCACCGTCAACCTCGCTCCGGCCGACCTGCCCAAGGACTCCGGCCGC
TTCGACCTCCCCATCGCCATTGGCATCCTGCTGGCTTCGGGCCAGGTGAAGAACGACGACATCGCCCGTTTCGAATTCGC
CGGCGAGCTGGCGCTCAGCGGCGCGGTGCGCCCGGTGCGCGGCGCCTTGGCGATGGCCTGCCAGTGCCACGCCGCCGGTC
GCGCTTTCGTGCTGCCTGCCGACAGCGCCGGCGAGGCGGCGGTGGTCGGCGGCGCCGCCGTCTACGCGGTGAAGTCCTTG
CCGCAGGCGTGCGCCTTTCTGAACGGTTTGCAGCCGTTGGAACCGTTCGCCGGCGCCATCGGCGGCGAGTGGCCGAACTA
TCCCGATCTGGCCGATGTCAAAGGCCAGTCCATCGCCCGCGGGGCTTTGGAAATCGCCGCGGCAGGCGGACACAGCTTGT
TGCTGATGGGGCCGCCGGGCACCGGCAAGTCCATGCTGGCGGCCAGGCTGCCCGGCCTGCTGCCGCCGTTGTCCGAAACA
GAGGCGCTGGAGAGCGCGGCGGTGCAGTCGCTGGGTTCGCAAGGCTTCCAGCCCGGCCGCTGGCGGGTGCGCCCGTTCAG
GTCGCCCCATCACACCGCTTCCGCGGTGGCGCTGGTCGGCGGCGGCAGTGAGCCGAGGCCGGGCGAGATCAGCCTGGCGC
ATCACGGCGTGCTGTTTCTCGACGAATTGCCGGAGTTCGACCGCAAGGTGCTGGAAGTGCTGCGCGAGCCGCTCGAGAGC
GGGATGATCCATATTTCGCGGGCGGCGAGGCAGGCCAGCTTCCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAATCCCTG
CCCCTGCGGCTACCACGGCCATCCGTCCGGGCGCTGTCAGTGCACTCCCGAGCAGGTGGCGAGATATCGAGGTAAAATCT
CCGGCCCTTTGCTGGACCGCATCGATTTGCAGGTGGAAGTGCCGGCGCTGACCGCGGACGAGCTGCAGCGGTCCGCTGCG
GGGGAGGCCAGCGAGGCGGTGCGCCATCGGGTGCTGACGGCGCGCGATCGCCAGTTGGCGCGGCAGGGCGGGCTGAATGC
GGCATTGCAGGGCGCGGAGCTGGAGCGGCATTGCCTCGGCGACGAGCAGGCGCTGGCGGTGCTGGCCAAGGCATTGCAAC
AACTTGGCTTGTCGGCGCGCGCGTATCATCGGATACTGCGGGTTTCGCGCACCATCGCCGATTTGCAGGGCGCGGAAACG
ATAAACCGCAACCATGTATTGCAGGCGATCCAGCTCAGGCGCGTCATGCAGAGCGGCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.535

99

0.53
  comM Haemophilus influenzae Rd KW20

51.575

100

0.524
  comM Glaesserella parasuis strain SC1401

51.896

100

0.52
  comM Vibrio campbellii strain DS40M4

52.525

99

0.52
  comM Legionella pneumophila str. Paris

51.19

100

0.516
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.464

Multiple sequence alignment