Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | CRN81_RS00780 | Genome accession | NZ_CP024028 |
| Coordinates | 170274..171410 (+) | Length | 378 a.a. |
| NCBI ID | WP_011133735.1 | Uniprot ID | - |
| Organism | Chromobacterium violaceum strain CV1192 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 165274..176410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN81_RS00750 (CRN81_00745) | dksA | 165813..166223 (-) | 411 | WP_011133729.1 | RNA polymerase-binding protein DksA | - |
| CRN81_RS00755 (CRN81_00750) | - | 166507..166812 (-) | 306 | WP_011133730.1 | c-type cytochrome | - |
| CRN81_RS00760 (CRN81_00755) | - | 166892..167473 (-) | 582 | WP_045051079.1 | YggT family protein | - |
| CRN81_RS00765 (CRN81_00760) | proC | 167483..168286 (-) | 804 | WP_011133732.1 | pyrroline-5-carboxylate reductase | - |
| CRN81_RS00770 (CRN81_00765) | - | 168341..169036 (-) | 696 | WP_011133733.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| CRN81_RS00775 (CRN81_00770) | pilT | 169174..170211 (+) | 1038 | WP_011133734.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| CRN81_RS00780 (CRN81_00775) | pilU | 170274..171410 (+) | 1137 | WP_011133735.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| CRN81_RS00785 (CRN81_00780) | - | 171436..173049 (+) | 1614 | WP_052262685.1 | response regulator | - |
| CRN81_RS00790 (CRN81_00785) | - | 173084..174697 (+) | 1614 | WP_099426244.1 | response regulator | - |
| CRN81_RS00795 (CRN81_00790) | - | 174697..175218 (+) | 522 | WP_052942148.1 | 2'-5' RNA ligase family protein | - |
| CRN81_RS00800 (CRN81_00795) | - | 175225..176010 (-) | 786 | WP_043613400.1 | TIGR00266 family protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42305.49 Da Isoelectric Point: 6.0195
>NTDB_id=251292 CRN81_RS00780 WP_011133735.1 170274..171410(+) (pilU) [Chromobacterium violaceum strain CV1192]
MEKDQASKFIHDLLKHATGKNASDIFIAAEFPPAMKIDGKITPVAPQALTALQSKELVRAVMNDRQTEEFEAKKEANFAI
NPPGVGRFRVSAFVQQGMVGMVLRKINTEIPTFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSNNQD
HIITIEDPIEYVHTHKKSIVTQREIGVDTENWEVALKNTLRQAPDVILMGEIRDRETMAYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRAIISQRLVPHKSGRGRVAAVEILLNSPLVSDMVFKGEIAGLKEVMGRSREAG
MQTFDQSLFELYEAELITYEDALRNADSINDLRLRIKLYSESARNRDPLEGIDHLDIV
MEKDQASKFIHDLLKHATGKNASDIFIAAEFPPAMKIDGKITPVAPQALTALQSKELVRAVMNDRQTEEFEAKKEANFAI
NPPGVGRFRVSAFVQQGMVGMVLRKINTEIPTFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSNNQD
HIITIEDPIEYVHTHKKSIVTQREIGVDTENWEVALKNTLRQAPDVILMGEIRDRETMAYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRAIISQRLVPHKSGRGRVAAVEILLNSPLVSDMVFKGEIAGLKEVMGRSREAG
MQTFDQSLFELYEAELITYEDALRNADSINDLRLRIKLYSESARNRDPLEGIDHLDIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=251292 CRN81_RS00780 WP_011133735.1 170274..171410(+) (pilU) [Chromobacterium violaceum strain CV1192]
ATGGAAAAAGACCAGGCCTCCAAATTCATCCACGACCTGCTCAAGCATGCGACGGGAAAGAACGCCTCCGACATCTTCAT
CGCCGCCGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGGCGCTGACCGCCCTGCAGA
GCAAGGAACTGGTGCGCGCGGTGATGAACGACCGCCAGACCGAGGAGTTCGAGGCGAAGAAGGAAGCCAACTTCGCCATC
AACCCGCCCGGCGTCGGCCGTTTCCGCGTCAGCGCCTTCGTCCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCACCTTCGACCAGCTCAACCTGCCCGAGGTGCTGAAGGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCTCCGGCAAGTCCACCTCGCTGGCGGCGCTGGTAGACTGGCGCAACAGCAACAACCAGGAC
CACATCATCACGATCGAAGACCCGATCGAGTACGTACACACCCACAAGAAGTCCATCGTCACCCAACGCGAGATCGGCGT
GGACACCGAGAACTGGGAGGTCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGGGAGATCCGCG
ACCGCGAAACCATGGCCTACGGCCTGCAGTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAACTTCTTCCCCGAAGAGCGCCACCAGCAAGTGCTGATGGATCTGTCGCTGAACAT
GCGCGCCATCATTTCGCAGCGGCTGGTGCCGCACAAGTCCGGCCGCGGCCGGGTGGCGGCGGTGGAGATCCTGCTCAACA
GCCCGCTGGTGTCGGACATGGTGTTCAAGGGCGAGATCGCCGGGCTGAAGGAGGTGATGGGACGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGAACTGTACGAGGCCGAGCTGATCACTTACGAGGATGCGCTGCGCAACGCCGA
CTCCATCAACGACCTGCGCCTGAGAATCAAGCTGTACAGCGAGAGCGCCCGCAACCGGGACCCGCTGGAAGGCATAGACC
ACCTGGATATCGTCTGA
ATGGAAAAAGACCAGGCCTCCAAATTCATCCACGACCTGCTCAAGCATGCGACGGGAAAGAACGCCTCCGACATCTTCAT
CGCCGCCGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGGCGCTGACCGCCCTGCAGA
GCAAGGAACTGGTGCGCGCGGTGATGAACGACCGCCAGACCGAGGAGTTCGAGGCGAAGAAGGAAGCCAACTTCGCCATC
AACCCGCCCGGCGTCGGCCGTTTCCGCGTCAGCGCCTTCGTCCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCACCTTCGACCAGCTCAACCTGCCCGAGGTGCTGAAGGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCTCCGGCAAGTCCACCTCGCTGGCGGCGCTGGTAGACTGGCGCAACAGCAACAACCAGGAC
CACATCATCACGATCGAAGACCCGATCGAGTACGTACACACCCACAAGAAGTCCATCGTCACCCAACGCGAGATCGGCGT
GGACACCGAGAACTGGGAGGTCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGGGAGATCCGCG
ACCGCGAAACCATGGCCTACGGCCTGCAGTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAACTTCTTCCCCGAAGAGCGCCACCAGCAAGTGCTGATGGATCTGTCGCTGAACAT
GCGCGCCATCATTTCGCAGCGGCTGGTGCCGCACAAGTCCGGCCGCGGCCGGGTGGCGGCGGTGGAGATCCTGCTCAACA
GCCCGCTGGTGTCGGACATGGTGTTCAAGGGCGAGATCGCCGGGCTGAAGGAGGTGATGGGACGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGAACTGTACGAGGCCGAGCTGATCACTTACGAGGATGCGCTGCGCAACGCCGA
CTCCATCAACGACCTGCGCCTGAGAATCAAGCTGTACAGCGAGAGCGCCCGCAACCGGGACCCGCTGGAAGGCATAGACC
ACCTGGATATCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
60.857 |
92.593 |
0.563 |
| pilU | Acinetobacter baylyi ADP1 |
54.918 |
96.825 |
0.532 |
| pilU | Vibrio cholerae strain A1552 |
52.991 |
92.857 |
0.492 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.51 |
89.153 |
0.397 |
| pilT | Pseudomonas aeruginosa PAK |
40.653 |
89.153 |
0.362 |