Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BS636_RS06475 Genome accession   NZ_CP024011
Coordinates   1362561..1364048 (-) Length   495 a.a.
NCBI ID   WP_099338044.1    Uniprot ID   -
Organism   Acinetobacter sp. LoGeW2-3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1357561..1369048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS06450 (BS636_06450) - 1357630..1358028 (+) 399 WP_099338040.1 MAPEG family protein -
  BS636_RS06455 (BS636_06455) ppa 1358149..1358685 (+) 537 WP_005233448.1 inorganic diphosphatase -
  BS636_RS06460 (BS636_06460) - 1358776..1360116 (-) 1341 WP_099338041.1 OprD family outer membrane porin -
  BS636_RS06465 (BS636_06465) - 1360623..1361387 (+) 765 WP_099338042.1 TorF family putative porin -
  BS636_RS06470 (BS636_06470) - 1361759..1362508 (+) 750 WP_099338043.1 TorF family putative porin -
  BS636_RS06475 (BS636_06475) comM 1362561..1364048 (-) 1488 WP_099338044.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BS636_RS06480 (BS636_06480) - 1364113..1364340 (-) 228 WP_099338045.1 accessory factor UbiK family protein -
  BS636_RS06485 (BS636_06485) glnK 1364617..1364955 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  BS636_RS06490 (BS636_06490) - 1365015..1366424 (+) 1410 WP_099338046.1 ammonium transporter -
  BS636_RS06495 (BS636_06495) nrdR 1366564..1367031 (+) 468 WP_004787309.1 transcriptional regulator NrdR -
  BS636_RS06500 (BS636_06500) ribD 1367034..1368122 (+) 1089 WP_099338047.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54454.51 Da        Isoelectric Point: 7.7539

>NTDB_id=251133 BS636_RS06475 WP_099338044.1 1362561..1364048(-) (comM) [Acinetobacter sp. LoGeW2-3]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILLASGQLPENCTDGMEFIGELALDGQLRPITGTLSIAIACQQSQHELILPKENAQEACQLPDFRVFAATHL
KEVCDHLSKFAPLAQMNAQLQINHSDSRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSIANSNHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPGE
DSATVRARVITAYELQMQRQNKLNMSLNPKQLEQFAPLNQQASKMFELAQQKLNLSARAYHRVLRVARTIADLAESPEIQ
TQHLSEALSYRSQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=251133 BS636_RS06475 WP_099338044.1 1362561..1364048(-) (comM) [Acinetobacter sp. LoGeW2-3]
ATGTCTTTTGCTAAAATCCATACTCGGGGTTTGCTGGGTCTGCATGCCCCTTTAATTGAAGTCGAAGTGCATGTTAGTCA
GGGCATGCCCTCTTTAACCATTGTCGGTCTGCCTGAAGCGGCAGTTCGGGAAAGTAAAGACCGGGTTCGCTCAGCCATTT
TGAATAGTGGTTATCAGTTCCCAACCAAACGTCTGACGATTAATCTTGCCCCTGCTGATCTGCCCAAAGATGGTTCACGT
TTAGATCTACCGATTGCTTTAGGAATTCTACTGGCTTCAGGTCAACTCCCTGAAAACTGTACAGATGGTATGGAATTCAT
TGGTGAACTGGCGCTGGATGGTCAACTCCGTCCAATAACCGGTACGCTCAGTATTGCCATTGCCTGCCAACAATCACAGC
ATGAACTGATTCTACCTAAAGAAAATGCTCAAGAAGCCTGTCAGTTACCTGATTTCCGTGTCTTTGCCGCCACTCATTTG
AAAGAAGTCTGTGATCATTTAAGCAAGTTCGCCCCTTTAGCCCAGATGAATGCTCAGCTACAGATCAATCATTCAGACTC
TCGTTTTGATTTAGCCGATGTTAAAGGTCAACTGCGTCCAAGACGGGCTCTGGAAATTGCTGCTGCGGGTGGACATTCTT
TACTATTTAGAGGGCCACCGGGAACTGGTAAAACTTTATTGGCTTCACGGTTGGCGAGTATCTTGCCACCCCTCAATACT
CAGGAAAATCTGGAAGTTGCCAGTATTTACTCGATTGCCAATAGCAATCACCCTTTTGGACAGAGACCTTTCCGCGCCCC
GCATCATACTGCGTCTGCAGTAGCACTCGTGGGTGGAGGCTCTCATCCCAAACCGGGCGAAATTACGCTCGCACATCTAG
GGGTTTTATTTTTGGATGAGTTGCCGGAATTTGATAGGAAAGTTCTCGAAGTTCTACGTCAACCTTTAGAATCTAAAGAA
ATTGTGATTTCGCGTGCCTCACGGCAAATTACTTTTCCAGCCAACTTTCAACTGGTTGCAGCGATGAACCCCTGCCCTTG
TGGCTATGCTTTTAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATTAAACGTTATCAGAACCGGATTTCAGGAC
CATTACTGGATCGGATTGATTTACATATTGATGTACCGCCACTCCAGGCTCATGAATTACAGAGCACACAGCCGGGAGAA
GACTCTGCCACAGTCAGAGCGCGTGTGATAACTGCTTATGAACTACAAATGCAAAGACAAAATAAACTGAATATGAGTTT
AAATCCTAAACAACTTGAACAATTTGCACCGTTGAATCAGCAAGCGAGCAAAATGTTTGAACTTGCTCAACAGAAACTAA
ATTTATCTGCACGCGCTTATCATCGGGTATTACGTGTAGCACGAACCATTGCTGATCTGGCTGAAAGTCCGGAAATCCAG
ACTCAGCATTTATCAGAAGCCCTGTCTTATCGGAGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.6

100

0.531
  comM Glaesserella parasuis strain SC1401

51.093

100

0.519
  comM Vibrio cholerae strain A1552

51.008

100

0.511
  comM Vibrio campbellii strain DS40M4

50.806

100

0.509
  comM Legionella pneumophila str. Paris

49.395

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.316

100

0.481

Multiple sequence alignment