Detailed information NTG0251133

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSC29_RS02995
• Genome accession: NZ_CP029090
• Coordinates: 596838..597842 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain AR442
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 591838..602842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC29_RS02965 (CSC29_0602)	fghA	591930..592781 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
CSC29_RS02970 (CSC29_0603)	ispF	592852..593325 (+)	474	WP_023465018.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSC29_RS02975 (CSC29_0604)	truD	593322..594389 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
CSC29_RS02980 (CSC29_0605)	surE	594377..595126 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CSC29_RS02985 (CSC29_0606)	-	595159..595794 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CSC29_RS02990 (CSC29_0607)	-	595840..596733 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
CSC29_RS02995 (CSC29_0608)	rpoS	596838..597842 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CSC29_RS03000 (CSC29_0609)	fdxA	598269..598592 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CSC29_RS03005 (CSC29_0610)	mutS	598659..601226 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
CSC29_RS03015 (CSC29_0612)	-	601352..602359 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=251133 CSC29_RS02995 WP_003113871.1 596838..597842(+) (rpoS) [Pseudomonas aeruginosa strain AR442]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=251133 CSC29_RS02995 WP_003113871.1 596838..597842(+) (rpoS) [Pseudomonas aeruginosa strain AR442]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653