Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CRN72_RS06000 Genome accession   NZ_CP023972
Coordinates   1277164..1278693 (-) Length   509 a.a.
NCBI ID   WP_096743448.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_385     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1272164..1283693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN72_RS05980 (CRN72_05980) - 1273469..1274152 (-) 684 WP_096743447.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  CRN72_RS05985 (CRN72_05985) envC 1274335..1275564 (+) 1230 WP_151244430.1 murein hydrolase activator EnvC -
  CRN72_RS05990 (CRN72_05990) - 1275561..1276403 (+) 843 WP_061406322.1 divergent polysaccharide deacetylase family protein -
  CRN72_RS05995 (CRN72_05995) - 1276424..1277110 (+) 687 WP_061406323.1 hypothetical protein -
  CRN72_RS06000 (CRN72_06000) comM 1277164..1278693 (-) 1530 WP_096743448.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CRN72_RS06005 (CRN72_06005) yihA 1278802..1279419 (-) 618 WP_005724253.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CRN72_RS06010 (CRN72_06010) - 1279530..1280399 (+) 870 WP_096743449.1 VirK/YbjX family protein -
  CRN72_RS06015 (CRN72_06015) trmL 1280473..1280949 (-) 477 WP_042742721.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  CRN72_RS06020 (CRN72_06020) - 1281107..1281433 (+) 327 WP_005725755.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CRN72_RS06025 (CRN72_06025) - 1281548..1281874 (+) 327 WP_096743450.1 HigA family addiction module antitoxin -
  CRN72_RS06030 (CRN72_06030) - 1281929..1283449 (-) 1521 WP_096743451.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55943.34 Da        Isoelectric Point: 9.6875

>NTDB_id=251070 CRN72_RS06000 WP_096743448.1 1277164..1278693(-) (comM) [Pasteurella multocida strain FDAARGOS_385]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSHQDTYFAQHL
LEVVNFLNDHATLPLASDLPTQHDPAFLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=251070 CRN72_RS06000 WP_096743448.1 1277164..1278693(-) (comM) [Pasteurella multocida strain FDAARGOS_385]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCCCAATTTAAATACCCAGCTAAACGGATCACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACGGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCTTCGTTAGTTTCCCACCAAGACACCTATTTTGCTCAACATTTA
CTAGAGGTCGTCAATTTTCTCAATGATCATGCTACGTTACCTTTAGCCTCAGATCTGCCCACACAACATGATCCGGCCTT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCTTTAACCATTGCTGCCGCAG
GGCAACATAATCTGCTTTTTTTGGGTCCGCCTGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAGCGCCCATTTCGTGCCCCTCATCACAGTGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGAG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTTGATGAGTTACCGGAATTTGAACGCAAAGTATTGGATGCCTTACGC
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTACGTTATCTCA
ATCGCTTATCCGGTCCATTTTTAGATCGGTTTGATTTGTCAATCGAAGTCCCTTTACTCCCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGCGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAGA
ATGCCTTAGCCAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGTCAAATTCAACAATGCCACCTCGCCGAAGCACTAGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.813

99.607

0.845
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.748

99.804

0.656
  comM Legionella pneumophila str. Paris

51.6

98.232

0.507
  comM Legionella pneumophila strain ERS1305867

51.6

98.232

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47

Multiple sequence alignment