Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CRN72_RS03575 Genome accession   NZ_CP023972
Coordinates   745547..746758 (-) Length   403 a.a.
NCBI ID   WP_096743229.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_385     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 740547..751758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN72_RS03545 (CRN72_03545) raiA 741323..741640 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  CRN72_RS03550 (CRN72_03550) - 741885..743258 (-) 1374 WP_096743226.1 sodium:alanine symporter family protein -
  CRN72_RS03555 (CRN72_03555) - 743707..743976 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  CRN72_RS03560 (CRN72_03560) yacG 743976..744179 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  CRN72_RS03565 (CRN72_03565) coaE 744190..744810 (-) 621 WP_096743227.1 dephospho-CoA kinase -
  CRN72_RS03570 (CRN72_03570) - 744822..745547 (-) 726 WP_096743228.1 A24 family peptidase -
  CRN72_RS03575 (CRN72_03575) pilC 745547..746758 (-) 1212 WP_096743229.1 type II secretion system F family protein Machinery gene
  CRN72_RS03580 (CRN72_03580) pilB 746758..748146 (-) 1389 WP_096743230.1 GspE/PulE family protein Machinery gene
  CRN72_RS03585 (CRN72_03585) pilA 748146..748580 (-) 435 WP_083004804.1 prepilin peptidase-dependent pilin Machinery gene
  CRN72_RS03590 (CRN72_03590) ampD 748740..749306 (+) 567 WP_083004802.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CRN72_RS03595 (CRN72_03595) rppH 749892..750488 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  CRN72_RS03600 (CRN72_03600) - 750491..751285 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46156.13 Da        Isoelectric Point: 9.7864

>NTDB_id=251057 CRN72_RS03575 WP_096743229.1 745547..746758(-) (pilC) [Pasteurella multocida strain FDAARGOS_385]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQFSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASHIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCTQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=251057 CRN72_RS03575 WP_096743229.1 745547..746758(-) (pilC) [Pasteurella multocida strain FDAARGOS_385]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGTTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCCATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTACACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.642

100

0.489
  pilC Haemophilus influenzae 86-028NP

48.395

100

0.486
  pilC Glaesserella parasuis strain SC1401

39.012

100

0.392

Multiple sequence alignment