Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CRN79_RS11155 Genome accession   NZ_CP023956
Coordinates   2499984..2501507 (-) Length   507 a.a.
NCBI ID   WP_065683943.1    Uniprot ID   A0A1C7WC04
Organism   Serratia fonticola strain FDAARGOS_411     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2494984..2506507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN79_RS11130 (CRN79_11125) ytfR 2495143..2496657 (+) 1515 WP_098929460.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  CRN79_RS11135 (CRN79_11130) ytfT 2496654..2497676 (+) 1023 WP_098929461.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  CRN79_RS11140 (CRN79_11135) yjfF 2497673..2498665 (+) 993 WP_098929462.1 galactofuranose ABC transporter, permease protein YjfF -
  CRN79_RS11145 (CRN79_11140) hdfR 2498670..2499497 (-) 828 WP_098929463.1 HTH-type transcriptional regulator HdfR -
  CRN79_RS11150 (CRN79_11145) - 2499617..2499955 (+) 339 WP_021181829.1 DUF413 domain-containing protein -
  CRN79_RS11155 (CRN79_11150) comM 2499984..2501507 (-) 1524 WP_065683943.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CRN79_RS11160 (CRN79_11155) - 2501850..2503082 (+) 1233 WP_065683944.1 MFS transporter -
  CRN79_RS11165 (CRN79_11160) ilvL 2503216..2503314 (+) 99 WP_071681478.1 ilv operon leader peptide -
  CRN79_RS11170 (CRN79_11165) ilvG 2503456..2505102 (+) 1647 WP_098929464.1 acetolactate synthase 2 catalytic subunit -
  CRN79_RS11175 (CRN79_11170) ilvM 2505099..2505356 (+) 258 WP_021181824.1 acetolactate synthase 2 small subunit -
  CRN79_RS11180 (CRN79_11175) ilvE 2505378..2506304 (+) 927 WP_021181823.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54615.94 Da        Isoelectric Point: 8.0945

>NTDB_id=250857 CRN79_RS11155 WP_065683943.1 2499984..2501507(-) (comM) [Serratia fonticola strain FDAARGOS_411]
MSLAVIYTRATIGVQAPSVMVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRAVHGAIPAAIAAAEAKRELILAAANGKEAGLLPNSTTRVAEHL
LEVCAFLQGKGDLPIAVAPPAAATSTETADLQEVIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
REALESVAVASLLHHPDETLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGVLAKQHHA
GESSQQVRQRVLVAREQQLARAGKVNALLSNREVDRDCHLPATEAEFLEKTLSQLGLSVRAWHRILKVARTLADLAGEQQ
IDKRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=250857 CRN79_RS11155 WP_065683943.1 2499984..2501507(-) (comM) [Serratia fonticola strain FDAARGOS_411]
ATGTCACTGGCGGTAATCTATACCCGTGCCACGATCGGCGTGCAGGCGCCTTCGGTCATGGTTGAAGTCCATATCAGCAA
CGGATTACCCGGCCTTACCCTGGTCGGCCTGCCGGAAACCACGGTGAAAGAAGCCCGTGACCGGGTGCGCAGCGCACTGA
TCAACAACGGTTTCACCTTTCCGGCCAAACGCATCACCGTCAATCTGGCACCGGCCGATTTGCCTAAGGAAGGGGGGCGC
TATGATTTACCCATTGCGCTGGCCATTCTGGCGGCCTCAGAGCAGCTGCCAGCAGATAAGTTGGCGCACTATGAGTTCCT
GGGTGAATTAGCGCTTTCTGGCGCATTGAGGGCGGTGCACGGCGCCATTCCGGCGGCAATAGCGGCAGCCGAGGCCAAGC
GGGAGTTGATCCTGGCTGCGGCCAACGGCAAAGAGGCGGGGTTGCTTCCCAACAGCACGACCCGAGTCGCAGAACATTTA
CTGGAGGTGTGCGCTTTTTTGCAGGGTAAGGGGGATCTGCCGATCGCCGTAGCGCCTCCTGCGGCTGCCACGTCAACGGA
AACTGCCGACTTGCAGGAAGTCATTGGCCAGGAACAGGCAAAGCGAGCGTTGGAAATTGCCGCGGCCGGGGGCCACAACC
TGTTGCTGCTTGGCCCCCCGGGCACCGGCAAAACCATGCTGGCCAGCCGCCTCAACGGCTTGCTGCCGCCGTTAAGCGAT
CGGGAGGCGCTGGAAAGCGTCGCCGTTGCCAGCTTACTGCATCATCCAGATGAAACCCTGCCATGGCGCCAGCGGCCGTT
TCGCGCCCCACACCACAGCGCCTCGATGGCTGCCCTGGTTGGGGGAGGTTCCTTGCCACGGCCAGGGGAAATCTCCATGG
CGCACAACGGCGTACTGTTTCTGGATGAGTTACCCGAATTTGAACGGCGAGTATTGGATGCGCTGCGTGAGCCGCTGGAA
TCCGGTGAAATCGTCATCTCACGCGCCAGCGCCAAGGTACGCTTCCCTGCCCGAGTGCAGCTGATTGCGGCGATGAACCC
CAGCCCAACCGGGCACTATCAGGGCATACACAACCGCACGCCACCGCAGCAGATTTTGCGCTACCTCGGCAGGCTCTCTG
GCCCCTTCCTCGATCGATTTGATTTGTCGATTGAGGTGCCGCTGCTGCCACCGGGCGTACTGGCCAAGCAGCACCATGCG
GGGGAAAGCAGCCAACAGGTACGTCAACGGGTGCTGGTGGCGCGCGAACAGCAGCTGGCACGGGCAGGTAAAGTGAATGC
GCTGTTGAGTAACCGCGAGGTGGATCGGGATTGCCATTTGCCCGCAACTGAAGCGGAGTTTTTAGAGAAAACGCTGAGCC
AACTGGGATTATCGGTTCGAGCCTGGCATCGCATCCTGAAAGTGGCACGCACGCTGGCCGATTTGGCAGGGGAACAACAG
ATTGATAAACGCCATCTCAGCGAAGCGCTCAGCTATCGCAGTATGGATCGCCTGCTGCTGCAGCTACATCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7WC04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.403

99.803

0.663
  comM Vibrio cholerae strain A1552

66.135

99.014

0.655
  comM Glaesserella parasuis strain SC1401

64.892

100

0.649
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.882

100

0.462

Multiple sequence alignment