Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CK910_RS05535 Genome accession   NZ_CP023818
Coordinates   1179246..1180760 (-) Length   504 a.a.
NCBI ID   WP_098981448.1    Uniprot ID   -
Organism   Aeromonas sp. CA23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1174246..1185760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK910_RS05510 (CK910_05510) - 1175456..1176091 (-) 636 WP_098981440.1 nicotinamidase -
  CK910_RS05515 (CK910_05515) - 1176167..1176817 (+) 651 WP_043142945.1 DNA mismatch repair protein MutT -
  CK910_RS05520 (CK910_05520) - 1176814..1177311 (+) 498 WP_098981442.1 DUF523 domain-containing protein -
  CK910_RS05525 (CK910_05525) - 1177242..1178201 (-) 960 WP_098981444.1 acyltransferase -
  CK910_RS05530 (CK910_05530) - 1178211..1179110 (-) 900 WP_098981446.1 acyltransferase -
  CK910_RS05535 (CK910_05535) comM 1179246..1180760 (-) 1515 WP_098981448.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CK910_RS05540 (CK910_05540) ilvG 1181145..1182791 (+) 1647 WP_098981450.1 acetolactate synthase 2 catalytic subunit -
  CK910_RS05545 (CK910_05545) ilvM 1182788..1183078 (+) 291 WP_043142928.1 acetolactate synthase 2 small subunit -
  CK910_RS05550 (CK910_05550) - 1183091..1184035 (+) 945 WP_098981452.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54691.61 Da        Isoelectric Point: 7.4494

>NTDB_id=250327 CK910_RS05535 WP_098981448.1 1179246..1180760(-) (comM) [Aeromonas sp. CA23]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQRLGLSIRAWHRILRVSRTIADLAGRPAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=250327 CK910_RS05535 WP_098981448.1 1179246..1180760(-) (comM) [Aeromonas sp. CA23]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCACCGCAAGTCACGGTGGAAGTTCATCTCTCCAA
TGGCCTGCCCGCTTTCAATATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCTCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGTCCAAACACATCACGGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCATGAATTTTT
GGGGGAATTGGCCCTGACCGGCGAGATCCGGCCCGTGCTCGGAGTGCTGCCTGCCGTGCTCGCCTGCCGCGACGCGGGGC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCGGAGGCCTCCCTCATCCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTAGCGGGTCAGTACGAGCTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGTTGGAGATCGCCGCCGCAGGCAGCCATAACCTGC
TGTTCATAGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTTTGCCCGGCATTCTGCCACCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGGCCATACCG
CACGCCCCATCACAGCGCCTCGGCGGTAGCACTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAGATCTCGCTGGCCC
ACAACGGCGTGCTGTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAACCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGGGCCATGAACCCCAG
CCCCTGCGGTCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATACTGCGCTACCTCGGCAAGCTCTCGGGCC
CCTTTCTCGATCGCTTCGATCTGACGGTAGAGGTGCCGCTGCTGCCCAAGGGCAGCCTCACCGGCAAGGCGGAACGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTGCTGGCGGCGCGGGAGCGGATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGGATAGTCGCGAGATAGAGGACATTTGCCGATTATCACCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAGGC
TTGGGCTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTATCGCGCACCATAGCGGATCTGGCGGGACGGCCCGCCATC
GAGAAGGAGCACCTGATCGAGGCCCTCGGTTATCGCGCCATGGACCGGCTGCTGTCACGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.067

100

0.613
  comM Glaesserella parasuis strain SC1401

59.961

100

0.603
  comM Legionella pneumophila str. Paris

50.595

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.595

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462

Multiple sequence alignment