Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CK911_RS16325 Genome accession   NZ_CP023817
Coordinates   3639196..3640710 (+) Length   504 a.a.
NCBI ID   WP_098971259.1    Uniprot ID   A0A291TMC0
Organism   Aeromonas sp. CU5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3634196..3645710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK911_RS16310 (CK911_16310) - 3635933..3636877 (-) 945 WP_098971254.1 branched-chain amino acid transaminase -
  CK911_RS16315 (CK911_16315) ilvM 3636890..3637168 (-) 279 WP_005339613.1 acetolactate synthase 2 small subunit -
  CK911_RS16320 (CK911_16320) ilvG 3637165..3638811 (-) 1647 WP_098971257.1 acetolactate synthase 2 catalytic subunit -
  CK911_RS16325 (CK911_16325) comM 3639196..3640710 (+) 1515 WP_098971259.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CK911_RS16330 (CK911_16330) - 3640847..3641746 (+) 900 WP_098971261.1 acyltransferase -
  CK911_RS16335 (CK911_16335) - 3641753..3642718 (+) 966 WP_068978243.1 acyltransferase -
  CK911_RS16340 (CK911_16340) - 3642643..3643146 (-) 504 WP_098971264.1 DUF523 domain-containing protein -
  CK911_RS16345 (CK911_16345) - 3643143..3643793 (-) 651 WP_098971266.1 DNA mismatch repair protein MutT -
  CK911_RS16350 (CK911_16350) - 3643868..3644503 (+) 636 WP_098971268.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54565.49 Da        Isoelectric Point: 7.6716

>NTDB_id=250310 CK911_RS16325 WP_098971259.1 3639196..3640710(+) (comM) [Aeromonas sp. CU5]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVIACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGRWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLGRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRNG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=250310 CK911_RS16325 WP_098971259.1 3639196..3640710(+) (comM) [Aeromonas sp. CU5]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGTAAACACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGTCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTAATCGCCTGCCGCGATGCGGGAC
GCACCCTGCTTGTACCGCGAGAAAATGGCCCAGAAGCCTCGCTGATCCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTAGCAGGCCAGTACGAACTGCCACTACCGGATCCCCAAAGCGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGATTGCCCGGCATTCTGCCGCCCCTTAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCCGGACGCTGGCACCACAGACCCTATCG
CACACCCCACCACAGCGCCTCGGCGGTAGCGCTGGTTGGCGGTGGCAGCCACCCACGCCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTTGAGCGCAAGGTGCTCGACTCCCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCTAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTAGAGGTGCCGCTACTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCAAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGCGAGCGCATGCTCGGCCGCAATGGCAAACTCAACAATCT
GCTGGATAGTCGCGAGATAGAGGATATTTGCCGACTATCACCGCAAGATGCCGAATTTTTGGAAAATGCGATCCAGAAGC
TGGGGCTCAGCATAAGGGCCTGGCACCGCATTTTGCGGGTATCGCGCACCATCGCCGACTTGGCCGGGCAACCGGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGATCGGCTGCTGTCGCGGCTACGTAACGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291TMC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.417

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

60.75

100

0.611
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment