Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CP942_RS14765 Genome accession   NZ_CP023666
Coordinates   3008304..3009041 (+) Length   245 a.a.
NCBI ID   WP_105979662.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3003304..3014041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS14740 degS 3003600..3004757 (+) 1158 WP_020453119.1 sensor histidine kinase Regulator
  CP942_RS14745 degU 3004839..3005528 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  CP942_RS14750 - 3005648..3006490 (+) 843 WP_020453118.1 DegV family protein -
  CP942_RS14755 comFA 3006614..3008008 (+) 1395 WP_105980589.1 DEAD/DEAH box helicase Machinery gene
  CP942_RS14760 - 3008063..3008347 (+) 285 WP_020453116.1 late competence development ComFB family protein -
  CP942_RS14765 comFC 3008304..3009041 (+) 738 WP_105979662.1 double zinc ribbon domain-containing protein Machinery gene
  CP942_RS14770 - 3009100..3009519 (+) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  CP942_RS14775 flgM 3009599..3009865 (+) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  CP942_RS14780 - 3009884..3010360 (+) 477 WP_023856391.1 flagellar protein FlgN -
  CP942_RS14785 flgK 3010376..3011899 (+) 1524 WP_023856390.1 flagellar hook-associated protein FlgK -
  CP942_RS14790 flgL 3011910..3012821 (+) 912 WP_095292078.1 flagellar hook-associated protein FlgL -
  CP942_RS14795 - 3012871..3013437 (+) 567 WP_105979664.1 DUF6470 family protein -
  CP942_RS14800 fliW 3013459..3013890 (+) 432 WP_188016667.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28141.73 Da        Isoelectric Point: 9.6415

>NTDB_id=249118 CP942_RS14765 WP_105979662.1 3008304..3009041(+) (comFC) [Bacillus paralicheniformis strain Bac48]
MTTRFAKAIEKGGNELHCLICEAPLLHSLSWRALFFLRSEEKICRACKDNFIRIEGRTMCPKCGRPQESEELCGDCLKWE
ADPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPSFINAFHQYYRHTPAVLVPIPLSEERKAERGFNQAER
LASLLKKPVMHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHGADCLMTSGEAKSVSSF
TLIRS

Nucleotide


Download         Length: 738 bp        

>NTDB_id=249118 CP942_RS14765 WP_105979662.1 3008304..3009041(+) (comFC) [Bacillus paralicheniformis strain Bac48]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGAAATGAACTGCATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTATTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGACAATTTTATCAGGA
TCGAAGGAAGAACGATGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAACTTTGCGGTGACTGCCTAAAATGGGAA
GCTGATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGC
CCGTTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTCATTTATCAATGCTTTCCACCAATATTACC
GCCACACTCCAGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGAGG
CTTGCTTCCTTATTAAAAAAACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAA
AGAACGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCGGTAAAGAATCTGGATATCATATTGATCGACGACT
TGTATACGACAGGGGCGACCCTTCATCATGGCGCTGATTGTCTGATGACATCCGGTGAGGCAAAATCTGTATCATCATTT
ACATTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.361

97.143

0.518

Multiple sequence alignment