Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CP942_RS14755 Genome accession   NZ_CP023666
Coordinates   3006614..3008008 (+) Length   464 a.a.
NCBI ID   WP_105980589.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3001614..3013008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS14730 - 3001646..3002724 (-) 1079 Protein_2856 LCP family protein -
  CP942_RS14735 - 3002739..3003377 (-) 639 WP_105979660.1 YigZ family protein -
  CP942_RS14740 degS 3003600..3004757 (+) 1158 WP_020453119.1 sensor histidine kinase Regulator
  CP942_RS14745 degU 3004839..3005528 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  CP942_RS14750 - 3005648..3006490 (+) 843 WP_020453118.1 DegV family protein -
  CP942_RS14755 comFA 3006614..3008008 (+) 1395 WP_105980589.1 DEAD/DEAH box helicase Machinery gene
  CP942_RS14760 - 3008063..3008347 (+) 285 WP_020453116.1 late competence development ComFB family protein -
  CP942_RS14765 comFC 3008304..3009041 (+) 738 WP_105979662.1 double zinc ribbon domain-containing protein Machinery gene
  CP942_RS14770 - 3009100..3009519 (+) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  CP942_RS14775 flgM 3009599..3009865 (+) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  CP942_RS14780 - 3009884..3010360 (+) 477 WP_023856391.1 flagellar protein FlgN -
  CP942_RS14785 flgK 3010376..3011899 (+) 1524 WP_023856390.1 flagellar hook-associated protein FlgK -
  CP942_RS14790 flgL 3011910..3012821 (+) 912 WP_095292078.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53120.90 Da        Isoelectric Point: 9.8117

>NTDB_id=249117 CP942_RS14755 WP_105980589.1 3006614..3008008(+) (comFA) [Bacillus paralicheniformis strain Bac48]
MIHIEHPASYSCELRSCLEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACFMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGVEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIILDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPFRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFSESALVQMAGRAGRHPEYTVGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=249117 CP942_RS14755 WP_105980589.1 3006614..3008008(+) (comFA) [Bacillus paralicheniformis strain Bac48]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTTTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGGTGGAAATCGCCGCTTTATACGGAGGGAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCTTAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCCGAGTA
CACAGTTGGAGACGTCTGTTTCTTTCATCACGGCAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-424)

Type III restriction enzyme, res subunit (ResIII)

(122-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.769

98.707

0.56

Multiple sequence alignment