Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CP942_RS14745 Genome accession   NZ_CP023666
Coordinates   3004839..3005528 (+) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain Bac48     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999839..3010528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS14720 - 3000039..3001103 (+) 1065 WP_095292064.1 glycosyltransferase family 4 protein -
  CP942_RS14725 - 3001212..3001568 (+) 357 Protein_2855 hypothetical protein -
  CP942_RS14730 - 3001646..3002724 (-) 1079 Protein_2856 LCP family protein -
  CP942_RS14735 - 3002739..3003377 (-) 639 WP_105979660.1 YigZ family protein -
  CP942_RS14740 degS 3003600..3004757 (+) 1158 WP_020453119.1 sensor histidine kinase Regulator
  CP942_RS14745 degU 3004839..3005528 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  CP942_RS14750 - 3005648..3006490 (+) 843 WP_020453118.1 DegV family protein -
  CP942_RS14755 comFA 3006614..3008008 (+) 1395 WP_105980589.1 DEAD/DEAH box helicase Machinery gene
  CP942_RS14760 - 3008063..3008347 (+) 285 WP_020453116.1 late competence development ComFB family protein -
  CP942_RS14765 comFC 3008304..3009041 (+) 738 WP_105979662.1 double zinc ribbon domain-containing protein Machinery gene
  CP942_RS14770 - 3009100..3009519 (+) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  CP942_RS14775 flgM 3009599..3009865 (+) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  CP942_RS14780 - 3009884..3010360 (+) 477 WP_023856391.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=249116 CP942_RS14745 WP_003185730.1 3004839..3005528(+) (degU) [Bacillus paralicheniformis strain Bac48]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=249116 CP942_RS14745 WP_003185730.1 3004839..3005528(+) (degU) [Bacillus paralicheniformis strain Bac48]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACAAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment