Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CPC19_RS02735 Genome accession   NZ_CP023664
Coordinates   554070..555584 (-) Length   504 a.a.
NCBI ID   WP_016390452.1    Uniprot ID   A0AB33Z1S5
Organism   Cycloclasticus sp. PY97N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 549070..560584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPC19_RS02710 (CPC19_02710) - 550443..550721 (-) 279 WP_016390448.1 hypothetical protein -
  CPC19_RS02715 (CPC19_02715) - 550721..550966 (-) 246 WP_016390449.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  CPC19_RS02725 (CPC19_02725) - 551523..552002 (+) 480 WP_016390450.1 cytochrome c5 family protein -
  CPC19_RS02730 (CPC19_02730) - 552004..554007 (-) 2004 WP_096910738.1 UvrD-helicase domain-containing protein -
  CPC19_RS02735 (CPC19_02735) comM 554070..555584 (-) 1515 WP_016390452.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CPC19_RS02740 (CPC19_02740) - 555627..555875 (-) 249 WP_015006819.1 accessory factor UbiK family protein -
  CPC19_RS02745 (CPC19_02745) - 556086..556772 (+) 687 WP_016390454.1 TorF family putative porin -
  CPC19_RS02750 (CPC19_02750) glnK 557071..557409 (+) 339 WP_015006817.1 P-II family nitrogen regulator -
  CPC19_RS02755 (CPC19_02755) - 557434..558711 (+) 1278 WP_015006816.1 ammonium transporter -
  CPC19_RS02760 (CPC19_02760) - 558776..559666 (-) 891 WP_015006815.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  CPC19_RS02765 (CPC19_02765) djlA 559745..560521 (+) 777 WP_015006814.1 co-chaperone DjlA -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55322.32 Da        Isoelectric Point: 7.9676

>NTDB_id=248984 CPC19_RS02735 WP_016390452.1 554070..555584(-) (comM) [Cycloclasticus sp. PY97N]
MSLATTLTRSSTGINAPLVTVEAHLANGLPSLNIVGLPEAAVKESKDRVRSAILNCQFEFPAKRITINLAPADLPKEGGR
FDLPIALSILAASGQIPNDKLLDYEFLGELSLSGELRAIKGALPTAIACQTSHRTLCLPTHNQHEAALISSVDIIGAPHL
LAVCSHLHGQQELPLFKPKNDVTSPSINTLDFSDVHGQQHTKRALEIAAAGRHSLLMLGPPGTGKSMLAARLPSILPLLS
EEEAIETASIYSISQHNLDTHQWRMPPFRSPHHSASSVALVGGGSSPKPGEVSLAHHGVLFLDELPEFDRKVLEVLREPI
ENGKISISRANHQTEFPARFQLIAAMNPCPCGYLGDTSQRCQCNPVQISRYRNKISGPLLDRIDMHIEVPRISSEMLRKG
TNGGEQSSAQIALRVQHSQIKALKRQGQLNELLSTAQIKQHCQISDEDHQLLEQAIEKLGLSHRAYHRILRVSRTIADMD
HQTNIQRHHLTEALSYRRMDKRVT

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=248984 CPC19_RS02735 WP_016390452.1 554070..555584(-) (comM) [Cycloclasticus sp. PY97N]
ATGTCACTAGCTACTACTCTAACGCGCAGCTCCACTGGCATTAATGCGCCATTAGTAACCGTTGAAGCGCACCTAGCAAA
CGGTTTACCCAGCCTAAATATTGTTGGCTTACCTGAGGCGGCTGTTAAAGAAAGTAAAGATCGCGTACGCAGCGCTATTC
TCAATTGTCAATTTGAGTTTCCTGCTAAGCGCATCACCATTAACTTAGCACCTGCTGATTTACCCAAAGAAGGCGGGCGA
TTCGATTTACCCATAGCGCTTAGTATTCTTGCAGCCTCTGGCCAGATACCCAACGACAAGCTGCTTGATTATGAGTTTCT
TGGCGAATTATCGCTAAGCGGTGAATTAAGAGCCATTAAAGGCGCATTACCCACAGCTATAGCCTGCCAAACAAGCCATC
GAACACTCTGCTTACCCACCCATAATCAACACGAAGCAGCGCTCATCTCAAGTGTTGATATTATTGGCGCCCCCCATCTG
CTAGCTGTTTGCTCGCACCTTCATGGACAGCAAGAACTGCCTCTTTTTAAACCTAAAAATGATGTAACCTCTCCCTCAAT
AAATACTCTCGACTTTTCAGACGTTCACGGTCAGCAACACACCAAACGCGCACTAGAAATTGCCGCTGCTGGACGCCACA
GCCTATTAATGCTTGGCCCCCCAGGAACCGGCAAGTCAATGCTTGCAGCTCGATTACCAAGCATCTTGCCGCTACTAAGC
GAAGAAGAGGCCATTGAGACCGCCTCAATTTACTCTATTAGTCAGCACAACCTTGATACTCACCAGTGGCGGATGCCTCC
TTTTAGATCTCCTCACCATAGCGCTTCATCTGTTGCTTTGGTCGGTGGTGGCAGTTCGCCAAAACCCGGCGAAGTATCAC
TCGCGCATCATGGCGTTTTATTTTTAGACGAGCTCCCCGAATTTGACCGTAAAGTATTAGAGGTATTACGCGAACCTATT
GAAAATGGAAAAATATCCATCTCCCGCGCTAACCACCAAACAGAATTTCCTGCTCGCTTCCAACTTATCGCCGCGATGAA
CCCATGCCCTTGCGGTTACCTTGGTGATACTTCTCAACGATGCCAATGTAACCCTGTTCAAATCAGCCGTTATCGAAACA
AAATATCCGGCCCCTTGCTCGACAGAATTGATATGCATATTGAGGTACCCCGTATTTCCAGTGAAATGCTACGTAAAGGC
ACTAACGGAGGTGAGCAAAGTAGTGCACAAATTGCTTTACGGGTGCAACACTCGCAAATAAAAGCACTAAAACGACAAGG
TCAACTCAACGAATTATTATCCACTGCACAAATCAAACAACATTGCCAAATAAGCGATGAAGATCATCAGCTACTAGAGC
AGGCAATTGAAAAACTGGGTTTATCGCACCGTGCCTATCATCGCATTTTACGTGTCTCGCGAACCATCGCCGATATGGAC
CATCAAACTAATATTCAACGCCACCACTTAACTGAAGCCTTAAGCTATCGCCGCATGGATAAACGCGTCACATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.04

100

0.562
  comM Vibrio campbellii strain DS40M4

54.781

99.603

0.546
  comM Haemophilus influenzae Rd KW20

54.582

99.603

0.544
  comM Glaesserella parasuis strain SC1401

54.274

99.802

0.542
  comM Legionella pneumophila str. Paris

52.811

98.81

0.522
  comM Legionella pneumophila strain ERS1305867

52.811

98.81

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45

99.206

0.446

Multiple sequence alignment