Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPC19_RS00235 Genome accession   NZ_CP023664
Coordinates   42354..42818 (-) Length   154 a.a.
NCBI ID   WP_016390434.1    Uniprot ID   A0AB33Z2A8
Organism   Cycloclasticus sp. PY97N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 37354..47818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPC19_RS00215 (CPC19_00215) - 39329..39916 (-) 588 WP_016390437.1 lytic transglycosylase -
  CPC19_RS00220 (CPC19_00220) - 39927..40415 (-) 489 WP_015005046.1 hypothetical protein -
  CPC19_RS00225 (CPC19_00225) - 40567..40983 (+) 417 WP_016390436.1 hypothetical protein -
  CPC19_RS00230 (CPC19_00230) - 41359..42162 (+) 804 WP_016390435.1 SDR family oxidoreductase -
  CPC19_RS00235 (CPC19_00235) ssb 42354..42818 (-) 465 WP_016390434.1 single-stranded DNA-binding protein Machinery gene
  CPC19_RS00240 (CPC19_00240) - 42869..44266 (-) 1398 WP_016390433.1 MFS transporter -
  CPC19_RS00245 (CPC19_00245) uvrA 44335..47175 (+) 2841 WP_016390432.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16763.67 Da        Isoelectric Point: 5.2707

>NTDB_id=248979 CPC19_RS00235 WP_016390434.1 42354..42818(-) (ssb) [Cycloclasticus sp. PY97N]
MASRGVNKVILVGNLGKDPEIRYMPSGGAVANVTVATSESWKDKNTGEQKEQTEWHRVVFFNRLAEVVGEYLKKGSKIYV
EGALQTRKWQDQSGQDRYTTEIKASTMQMLDSRGGGSAEFSPAGSAPASKPSNFASAPAQPTAPMDDFDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=248979 CPC19_RS00235 WP_016390434.1 42354..42818(-) (ssb) [Cycloclasticus sp. PY97N]
ATGGCAAGCAGAGGCGTAAATAAAGTAATTTTGGTGGGTAACTTGGGTAAAGACCCTGAGATTCGTTATATGCCGAGTGG
TGGTGCGGTAGCCAATGTTACCGTGGCAACATCAGAATCATGGAAAGATAAAAATACAGGTGAACAAAAAGAACAAACAG
AGTGGCATAGGGTAGTGTTTTTTAATCGTTTAGCTGAGGTGGTTGGTGAGTACCTTAAGAAGGGCTCAAAAATTTATGTA
GAAGGTGCTTTGCAAACACGTAAATGGCAAGATCAAAGCGGACAAGACCGTTACACTACAGAAATTAAAGCCAGCACAAT
GCAAATGTTGGACAGCCGAGGCGGTGGTTCGGCTGAATTTTCGCCAGCAGGTTCAGCGCCGGCCTCGAAACCGAGTAATT
TTGCATCAGCACCGGCACAACCTACAGCACCGATGGATGATTTTGATGATGACATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.675
  ssb Glaesserella parasuis strain SC1401

56.742

100

0.656
  ssb Neisseria meningitidis MC58

45.087

100

0.506
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.506
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.483

100

0.39

Multiple sequence alignment