Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PFL01_RS27715 Genome accession   NC_007492
Coordinates   6172892..6174385 (+) Length   497 a.a.
NCBI ID   WP_011336528.1    Uniprot ID   Q3K4Q9
Organism   Pseudomonas fluorescens Pf0-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6167892..6179385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS27685 (Pfl01_5502) - 6168191..6168895 (+) 705 WP_011336525.1 HAD family hydrolase -
  PFL01_RS27690 (Pfl01_5503) sutA 6168961..6169287 (-) 327 WP_007951900.1 transcriptional regulator SutA -
  PFL01_RS27695 (Pfl01_5504) - 6169390..6169815 (-) 426 WP_011336526.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PFL01_RS27700 (Pfl01_5505) - 6170031..6171368 (-) 1338 WP_007951904.1 ammonium transporter -
  PFL01_RS27705 (Pfl01_5506) glnK 6171406..6171744 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PFL01_RS27710 (Pfl01_5507) - 6172143..6172403 (+) 261 WP_011336527.1 accessory factor UbiK family protein -
  PFL01_RS27715 (Pfl01_5508) comM 6172892..6174385 (+) 1494 WP_011336528.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PFL01_RS27720 (Pfl01_5509) - 6174754..6175920 (+) 1167 WP_011336529.1 hypothetical protein -
  PFL01_RS27725 (Pfl01_5510) - 6175995..6176543 (+) 549 WP_011336530.1 adenylyl-sulfate kinase -
  PFL01_RS27730 (Pfl01_5511) - 6176540..6177289 (+) 750 WP_011336531.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52825.96 Da        Isoelectric Point: 8.2051

>NTDB_id=24852 PFL01_RS27715 WP_011336528.1 6172892..6174385(+) (comM) [Pseudomonas fluorescens Pf0-1]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAATRVAEARERQQKRQGCANAFLDLPGLKKHCKLSTADETWLESACERLTLSLRSAHRLLKVARTLADIEKVDA
ISREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=24852 PFL01_RS27715 WP_011336528.1 6172892..6174385(+) (comM) [Pseudomonas fluorescens Pf0-1]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATAGGCGTGGATGCCCCCGCCGTCACCGTCGAAGTTCACCTGGCCAA
CGGCTTGCCCTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCAGTGAAGGAGAGCAAGGACCGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGAATTCTGTCGGCGAGTGTGCAGGTGCCGACGTTGACCCTGGATGACGTGGAATGCCT
GGGTGAGCTGGCGTTATCCGGTGCAGTGCGGGCGGTGCGTGGGGTGTTGCCAGCGGCGCTGGCGGCGCGCAAGGCAGGGC
GGACGCTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCGTGTCTGGCGTCAGGACTGAGGGTGATCGCAGTGGATCATCTG
CTGGAGGCTGTGGCGCATTTCAACGGGCATACACCGGTCGAGCCTTATGTCTCGGATGGGTTGATCCATGCCGCCAAACC
CTATCCCGACTTGAATGAGGTACAGGGCCAACTGGCCGCCAAACGGGCGCTGCTGATTGCCGCCGCCGGTGCGCACAATC
TGCTGTTCAGCGGGCCACCGGGGACGGGCAAGACGTTGCTGGCCAGCCGATTACCGGGATTGCTGCCACCGCTGGCCGAG
AGTGAAGCGCTGGAAGTGGCGGCGATTCAATCCGTCGCCAGCGGCGCACCGTTGACCCACTGGCCGCAGCGCCCGTTCCG
CCAACCGCATCACTCGGCCTCCGGGCCGGCATTGGTCGGCGGCAGTTCAAAACCGCAACCCGGTGAAATCACCCTCGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTACCCGAGTTTGATCGCAAGGTGTTGGAGGTTCTGCGCGAACCGCTGGAATCC
GGCTGCATCGTGATCGCAAGGGCCAAGGAACGGGTGCGGTTTCCCGCGAGATTCCAGCTGGTCGCGGCGATGAACCCCTG
CCCCTGTGGATATCTTGGCGAACCGAGCGGCAAGTGCTCGTGCACGCCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGGATCGATTTGCACCTGACGGTGGCGCGGGAGGCCACAGCGTTGAACCCTGCGGTGAAACCG
GGAGAGGACAGCGCCAGCGCGGCCACGCGGGTCGCCGAGGCCCGCGAGCGTCAGCAAAAACGTCAGGGCTGTGCCAATGC
GTTTCTCGATTTGCCGGGGCTGAAGAAGCACTGCAAGTTATCCACAGCCGATGAAACCTGGCTGGAGTCAGCCTGTGAGC
GACTGACCCTGTCGCTGCGTTCAGCACATCGGCTGCTCAAGGTTGCACGGACACTGGCCGATATAGAGAAGGTTGATGCC
ATATCACGTGAGCATCTGGCCGAAGCGCTGCAATATCGCCCAGCGACGCAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K4Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Vibrio campbellii strain DS40M4

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

52.906

100

0.531
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50

100

0.503
  comM Legionella pneumophila strain ERS1305867

50

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459

Multiple sequence alignment