Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DBP13_RS20115 Genome accession   NZ_CP028834
Coordinates   4359146..4359745 (+) Length   199 a.a.
NCBI ID   WP_108010793.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4354146..4364745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS20095 - 4354988..4355767 (-) 780 WP_128802499.1 hypothetical protein -
  DBP13_RS20100 - 4355868..4357415 (+) 1548 WP_128802500.1 substrate-binding domain-containing protein -
  DBP13_RS20105 - 4357725..4358474 (-) 750 WP_108010789.1 SLATT domain-containing protein -
  DBP13_RS20110 - 4358742..4359086 (+) 345 WP_108010791.1 YbaB/EbfC family nucleoid-associated protein -
  DBP13_RS20115 recR 4359146..4359745 (+) 600 WP_108010793.1 recombination mediator RecR Machinery gene
  DBP13_RS20120 - 4359738..4360397 (+) 660 WP_108010795.1 DUF5063 domain-containing protein -
  DBP13_RS20125 - 4360591..4361310 (-) 720 WP_234547991.1 sulfite exporter TauE/SafE family protein -
  DBP13_RS20130 - 4361582..4362874 (+) 1293 WP_108010797.1 aspartate kinase -
  DBP13_RS20135 - 4362900..4363958 (+) 1059 WP_108010799.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21750.12 Da        Isoelectric Point: 4.9909

>NTDB_id=248490 DBP13_RS20115 WP_108010793.1 4359146..4359745(+) (recR) [Streptomyces sp. M2]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDARRDPAV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=248490 DBP13_RS20115 WP_108010793.1 4359146..4359745(+) (recR) [Streptomyces sp. M2]
TTGTACGAAGGCGTGGTGCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACGGACGTACGGCGGCTGGCGCAGGCCCTGATGGAGGTCAAGGCCAAGGTCA
GGTTCTGTGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACGCACGCCGCGACCCCGCCGTC
ATCTGTGTGGTGGAGGAGCCCAAGGACGTGGTCGCCGTCGAGCGCACCCGTGAGTTCCGCGGCCGCTATCACGTCCTGGG
CGGAGCGATCAGCCCGATCGAGGGTGTCGGACCGGACGACCTGCGTATACGAGAACTTCTCGCGAGGTTGGCCGACGGTA
CGGTCACGGAACTGATCCTGGCCACGGACCCGAATCTGGAGGGCGAGGCCACCGCTACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452

Multiple sequence alignment