Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DBP13_RS10280 Genome accession   NZ_CP028834
Coordinates   2252364..2253143 (+) Length   259 a.a.
NCBI ID   WP_108007323.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2247364..2258143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS10265 - 2247542..2248075 (+) 534 WP_108007317.1 TerD family protein -
  DBP13_RS10270 - 2248184..2251078 (-) 2895 WP_128801745.1 vitamin B12-dependent ribonucleotide reductase -
  DBP13_RS10275 nrdR 2251239..2251799 (-) 561 WP_108007321.1 transcriptional regulator NrdR -
  DBP13_RS10280 dinR/lexA 2252364..2253143 (+) 780 WP_108007323.1 transcriptional repressor LexA Regulator
  DBP13_RS10285 - 2253300..2255276 (-) 1977 WP_108007325.1 ATP-dependent DNA helicase -
  DBP13_RS10290 - 2255557..2256315 (-) 759 WP_128804411.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28031.80 Da        Isoelectric Point: 7.0666

>NTDB_id=248459 DBP13_RS10280 WP_108007323.1 2252364..2253143(+) (dinR/lexA) [Streptomyces sp. M2]
MTTTADSATITAQDRSQGRLEPVHAMNEVVNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGATVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=248459 DBP13_RS10280 WP_108007323.1 2252364..2253143(+) (dinR/lexA) [Streptomyces sp. M2]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
CGAAGTTGTGAACCCAGAGGGGCACAAGCGCTCCCTGCCTGGTCGACCTCCAGGCATCCGCGCGGACAGCTCCGGGCTCA
CCGACCGGCAGCGCCGAGTGATCGAAGTCATCAGGGACTCCGTGCAGCGGCGCGGGTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCGAGCACCTCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGATTCCTGCGGCG
CGACCCGCACCGCCCGCGCGCCTACGAGGTCCGCGGCTCCGACCAGGGCGCCACCGTGCAGCCCACCGACACCGCAGGCA
AGCCCGCCGCGTCGTACGTCCCCCTGGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCTCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTGTTCGTACTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCGCGGCCATGCTGG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACGCCGCGTACGAGCCC
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCAGTGCTGCGCCGCGTATGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375

Multiple sequence alignment