Detailed information NTG0024843

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PFL01_RS24255
• Genome accession: NC_007492
• Coordinates: 5442636..5443508 (+)
• Length: 290 a.a.
• NCBI ID: WP_011335981.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens Pf0-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5437636..5448508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFL01_RS24230 (Pfl01_4817)	-	5437943..5438239 (+)	297	WP_011335976.1	DUF2845 domain-containing protein	-
PFL01_RS24235 (Pfl01_4818)	-	5438406..5438762 (-)	357	WP_011335977.1	BON domain-containing protein	-
PFL01_RS24240 (Pfl01_4819)	-	5439071..5439487 (-)	417	WP_011335978.1	pilin	-
PFL01_RS24245 (Pfl01_4820)	pilB	5439714..5441414 (+)	1701	WP_011335979.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PFL01_RS24250 (Pfl01_4821)	pilC	5441417..5442634 (+)	1218	WP_011335980.1	type II secretion system F family protein	Machinery gene
PFL01_RS24255 (Pfl01_4822)	pilD	5442636..5443508 (+)	873	WP_011335981.1	prepilin peptidase	Machinery gene
PFL01_RS24260 (Pfl01_4823)	coaE	5443505..5444128 (+)	624	WP_011335982.1	dephospho-CoA kinase	-
PFL01_RS24265 (Pfl01_4824)	yacG	5444125..5444325 (+)	201	WP_011335983.1	DNA gyrase inhibitor YacG	-
PFL01_RS24270 (Pfl01_4825)	-	5444332..5444547 (-)	216	WP_007959584.1	hypothetical protein	-
PFL01_RS24275 (Pfl01_4826)	-	5444613..5445302 (-)	690	WP_011335984.1	energy-coupling factor ABC transporter permease	-
PFL01_RS24280 (Pfl01_4827)	-	5445299..5445766 (-)	468	WP_011335985.1	hypothetical protein	-
PFL01_RS24285 (Pfl01_4828)	-	5445897..5446523 (+)	627	WP_007959580.1	DUF1780 domain-containing protein	-
PFL01_RS24290 (Pfl01_4829)	-	5446520..5447047 (+)	528	WP_011335986.1	MOSC domain-containing protein	-
PFL01_RS24295 (Pfl01_4830)	-	5447099..5447272 (+)	174	WP_003228304.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32304.64 Da
• Isoelectric Point: 7.7029

>NTDB_id=24843 PFL01_RS24255 WP_011335981.1 5442636..5443508(+) (pilD) [Pseudomonas fluorescens Pf0-1]
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGRCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=24843 PFL01_RS24255 WP_011335981.1 5442636..5443508(+) (pilD) [Pseudomonas fluorescens Pf0-1]
ATGCCTATCGACGAACTCTTCAGCCTGTATCCGCTGGCCTTTGTCTTCACCGCCCTGCTGCTGGGGCTGGTGGTCGGCAG
TTTCCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGTGAATGGCGCCAGCAGGCTCACGATGTTTTGGGGC
TGCCCGGTGAAGCACCGTTACCCACTTACAACCTGATGCTGCCGCACTCCCAATGCCCGCACTGTGGCCACCGGATCCGG
GCCTGGGAAAACATTCCCGTGTTGAGTTACGTGTTTCTGCGCGGGCGCTGTTCAAGTTGCAGCGCACCGATCAGCAAGCG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAACATCAATTGTTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGCTGCACGATGCCCTGTGGGGCGCGGT
GCTTGGGTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTGCTGTCTTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGCGACCAGAAAACCTCGACGCCGATTCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.128	97.241	0.507
pilD	Vibrio campbellii strain DS40M4	51.418	97.241	0.5
pilD	Acinetobacter baumannii D1279779	48.175	94.483	0.455
pilD	Acinetobacter nosocomialis M2	47.445	94.483	0.448
pilD	Neisseria gonorrhoeae MS11	47.037	93.103	0.438