Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NOC_RS16000 | Genome accession | NC_007484 |
| Coordinates | 3420694..3421185 (+) | Length | 163 a.a. |
| NCBI ID | WP_002813021.1 | Uniprot ID | - |
| Organism | Nitrosococcus oceani ATCC 19707 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3415694..3426185
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NOC_RS15990 (Noc_3021) | uvrA | 3416327..3419188 (-) | 2862 | WP_002813066.1 | excinuclease ABC subunit UvrA | - |
| NOC_RS15995 (Noc_3022) | - | 3419251..3420669 (+) | 1419 | WP_002813824.1 | MFS transporter | - |
| NOC_RS16000 (Noc_3023) | ssb | 3420694..3421185 (+) | 492 | WP_002813021.1 | single-stranded DNA-binding protein | Machinery gene |
| NOC_RS16005 (Noc_3024) | - | 3421303..3421635 (+) | 333 | WP_011330421.1 | IS630 transposase-related protein | - |
| NOC_RS16010 (Noc_3025) | - | 3421637..3422134 (+) | 498 | WP_011330422.1 | IS630 family transposase | - |
| NOC_RS16015 (Noc_3026) | - | 3422192..3422563 (+) | 372 | WP_011331129.1 | hypothetical protein | - |
| NOC_RS16020 (Noc_3027) | - | 3422652..3422891 (+) | 240 | WP_002813505.1 | HTH-like domain-containing protein | - |
| NOC_RS16025 (Noc_3028) | - | 3422932..3425322 (+) | 2391 | WP_002812955.1 | EcoAI/FtnUII family type I restriction enzme subunit R | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17866.69 Da Isoelectric Point: 5.7168
>NTDB_id=24825 NOC_RS16000 WP_002813021.1 3420694..3421185(+) (ssb) [Nitrosococcus oceani ATCC 19707]
MASRGVNKVILVGNLGRDPEVRYTASGGAIANITLATSETWKDKTTGEQQERTEWHRVVFFGRLGEIAGEYLKKGAKIYV
EGRLQTRKWQGQDGQDRYTTEIVASEMQMLDRATGGSAPYNEDNSMPRGGTAGHPPHSPSSPQPRPSAPPSSSNDDFEDD
IPF
MASRGVNKVILVGNLGRDPEVRYTASGGAIANITLATSETWKDKTTGEQQERTEWHRVVFFGRLGEIAGEYLKKGAKIYV
EGRLQTRKWQGQDGQDRYTTEIVASEMQMLDRATGGSAPYNEDNSMPRGGTAGHPPHSPSSPQPRPSAPPSSSNDDFEDD
IPF
Nucleotide
Download Length: 492 bp
>NTDB_id=24825 NOC_RS16000 WP_002813021.1 3420694..3421185(+) (ssb) [Nitrosococcus oceani ATCC 19707]
ATGGCATCAAGGGGCGTTAACAAAGTCATCCTGGTAGGTAACCTGGGGCGCGATCCGGAAGTTCGTTATACCGCCAGCGG
CGGAGCCATTGCCAATATCACCCTAGCGACTTCAGAAACCTGGAAAGATAAAACCACCGGCGAGCAGCAAGAGCGTACCG
AATGGCACCGGGTGGTATTCTTCGGTCGCCTGGGGGAAATTGCCGGGGAGTATCTAAAAAAAGGCGCCAAAATTTATGTG
GAAGGCCGCCTCCAAACTCGTAAGTGGCAGGGCCAAGACGGTCAGGACCGTTATACTACCGAGATTGTCGCCAGCGAAAT
GCAAATGCTGGATCGGGCCACAGGTGGTAGCGCCCCCTATAACGAGGATAATAGCATGCCAAGAGGAGGAACCGCGGGAC
ACCCTCCTCACTCCCCATCCAGCCCTCAACCCCGGCCTTCAGCTCCCCCCTCCTCTAGCAATGACGATTTCGAGGATGAT
ATTCCCTTTTGA
ATGGCATCAAGGGGCGTTAACAAAGTCATCCTGGTAGGTAACCTGGGGCGCGATCCGGAAGTTCGTTATACCGCCAGCGG
CGGAGCCATTGCCAATATCACCCTAGCGACTTCAGAAACCTGGAAAGATAAAACCACCGGCGAGCAGCAAGAGCGTACCG
AATGGCACCGGGTGGTATTCTTCGGTCGCCTGGGGGAAATTGCCGGGGAGTATCTAAAAAAAGGCGCCAAAATTTATGTG
GAAGGCCGCCTCCAAACTCGTAAGTGGCAGGGCCAAGACGGTCAGGACCGTTATACTACCGAGATTGTCGCCAGCGAAAT
GCAAATGCTGGATCGGGCCACAGGTGGTAGCGCCCCCTATAACGAGGATAATAGCATGCCAAGAGGAGGAACCGCGGGAC
ACCCTCCTCACTCCCCATCCAGCCCTCAACCCCGGCCTTCAGCTCCCCCCTCCTCTAGCAATGACGATTTCGAGGATGAT
ATTCCCTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.932 |
100 |
0.607 |
| ssb | Glaesserella parasuis strain SC1401 |
49.727 |
100 |
0.558 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.503 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.503 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.057 |
100 |
0.374 |