Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NOC_RS10745 Genome accession   NC_007484
Coordinates   2310225..2311742 (-) Length   505 a.a.
NCBI ID   WP_002809266.1    Uniprot ID   Q3J9N1
Organism   Nitrosococcus oceani ATCC 19707     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2305225..2316742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOC_RS10735 (Noc_2001) ilvD 2306097..2307950 (-) 1854 WP_011330829.1 dihydroxy-acid dehydratase -
  NOC_RS10740 (Noc_2002) rep 2308232..2310238 (-) 2007 WP_002809421.1 DNA helicase Rep -
  NOC_RS10745 (Noc_2003) comM 2310225..2311742 (-) 1518 WP_002809266.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NOC_RS10755 (Noc_2004) - 2311971..2312270 (-) 300 WP_002811780.1 ubiquinone biosynthesis accessory factor UbiK -
  NOC_RS10760 (Noc_2005) - 2312510..2313757 (+) 1248 WP_011330830.1 porin -
  NOC_RS10765 (Noc_2006) - 2313877..2315133 (-) 1257 WP_002810258.1 NAD(P)/FAD-dependent oxidoreductase -
  NOC_RS10770 (Noc_2007) - 2315206..2316291 (-) 1086 WP_011330831.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54926.05 Da        Isoelectric Point: 9.4164

>NTDB_id=24820 NOC_RS10745 WP_002809266.1 2310225..2311742(-) (comM) [Nitrosococcus oceani ATCC 19707]
MSLAIAYSRAQAGLDAPLVTVEAHLSNGLPAFSIVGLPETAVKESRERVRGALLNCHFEFPARRITVNLAPADLPKEGGR
FDLAIALGILAASGQISSPALRAYEFASELALSGKVRSIRGVLPAALQTAKAGRSLVVAEENAPEAALVSTVEVLAVSHL
LEICQHLRGESRLTPFTPNPLKVVADKRGDIADIRGQYHAKRALEVAAAGAHNLLMIGPPGTGKTMLASRLPGILPEMAE
AEALESATVQSISSQGFNSSRWRQRPFRTPHHTASGVALVGGGGQPRPGEVSLAHHGVLFLDELPEFERRVLEVLREPLE
SGRIVISRAAQQAEFPARVQLVAAMNPCPCGYLGDSKGRCRCTIEQVQRYRARISGPLLDRIDIQIEVPPVPLHQLRTES
ESRMETSCQVRTRVEAARERQLARFGQPNSRLGNREVEQICRLGEKNYQLLERALEQLGLSARAYHRILKVARTIADLEG
SETIRTPHLSEAIGYRRLDRSLAKS

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=24820 NOC_RS10745 WP_002809266.1 2310225..2311742(-) (comM) [Nitrosococcus oceani ATCC 19707]
ATGTCGCTAGCGATTGCCTACAGCCGGGCTCAGGCGGGCCTGGATGCCCCTTTGGTGACTGTGGAAGCCCACCTCTCAAA
TGGTCTCCCCGCTTTCTCCATCGTGGGTCTGCCAGAAACCGCAGTTAAGGAGAGCAGAGAACGGGTGCGAGGCGCACTGC
TCAACTGCCATTTTGAGTTTCCGGCGCGCCGTATTACGGTAAATCTGGCACCTGCGGATCTGCCCAAGGAAGGGGGGCGC
TTTGACTTGGCGATTGCTTTAGGTATTTTGGCTGCCTCGGGGCAGATTTCCTCACCTGCGTTAAGGGCTTATGAATTTGC
CAGCGAGCTTGCCTTAAGTGGGAAGGTGCGAAGTATCCGTGGAGTGTTACCTGCCGCATTGCAAACGGCAAAAGCGGGCC
GTAGTCTAGTGGTCGCTGAAGAAAATGCTCCCGAAGCGGCCCTCGTGTCCACGGTTGAAGTATTAGCGGTTTCCCATCTA
TTAGAAATTTGCCAACATCTTCGGGGCGAGTCACGGCTAACTCCCTTTACTCCCAACCCTCTTAAAGTGGTTGCCGATAA
AAGAGGGGATATTGCAGATATCCGGGGCCAGTACCATGCCAAACGAGCGTTGGAAGTGGCAGCCGCAGGGGCTCATAATT
TGTTAATGATCGGACCACCAGGAACTGGCAAAACCATGCTGGCCAGTCGCCTGCCGGGGATTTTGCCTGAGATGGCCGAA
GCCGAAGCGTTGGAAAGCGCCACTGTACAGTCAATCAGCAGCCAAGGTTTTAATTCTAGCCGCTGGCGCCAACGGCCTTT
CCGAACTCCCCATCATACGGCTTCTGGAGTAGCCTTGGTAGGCGGGGGCGGGCAGCCACGGCCAGGGGAGGTATCCTTGG
CGCACCATGGAGTGCTCTTTCTCGATGAGTTGCCAGAATTTGAGCGTCGGGTACTGGAGGTTCTTAGGGAACCCCTGGAA
TCGGGCCGCATTGTTATTTCCCGGGCAGCTCAGCAGGCCGAGTTTCCGGCTCGTGTACAGCTGGTGGCCGCCATGAATCC
TTGCCCCTGCGGTTATTTAGGCGATTCCAAAGGCCGTTGCCGATGCACCATAGAGCAAGTACAACGTTACCGGGCCCGGA
TTTCCGGGCCTTTATTAGATCGCATCGATATACAAATCGAGGTGCCACCCGTACCTTTGCATCAGTTACGAACCGAAAGT
GAGAGCAGGATGGAAACGAGTTGCCAGGTTCGAACTCGGGTGGAAGCAGCGCGGGAGCGTCAGTTAGCCCGTTTTGGGCA
ACCTAACAGCAGGTTAGGCAATCGGGAAGTGGAACAGATTTGCCGCCTTGGAGAGAAGAATTATCAGTTACTGGAGCGGG
CCTTGGAGCAATTAGGGCTTTCGGCGCGCGCCTACCACCGTATATTGAAAGTTGCCCGGACGATTGCCGATTTGGAGGGA
AGTGAAACTATTCGCACGCCCCATCTTTCCGAAGCGATTGGTTACCGGCGATTAGACCGTTCCCTTGCCAAATCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3J9N1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.738

99.802

0.576
  comM Haemophilus influenzae Rd KW20

56.385

100

0.568
  comM Vibrio campbellii strain DS40M4

56.436

100

0.564
  comM Glaesserella parasuis strain SC1401

54.724

100

0.55
  comM Legionella pneumophila str. Paris

50.302

98.416

0.495
  comM Legionella pneumophila strain ERS1305867

50.302

98.416

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.289

100

0.469

Multiple sequence alignment