Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CO700_RS22910 Genome accession   NZ_CP023527
Coordinates   4678744..4680264 (-) Length   506 a.a.
NCBI ID   WP_060816121.1    Uniprot ID   A0AAW7EWE0
Organism   Citrobacter koseri strain FDAARGOS_393     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4673744..4685264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO700_RS22900 (CO700_22900) hdfR 4677428..4678273 (-) 846 WP_012131114.1 HTH-type transcriptional regulator HdfR -
  CO700_RS22905 (CO700_22905) maoP 4678380..4678718 (+) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  CO700_RS22910 (CO700_22910) comM 4678744..4680264 (-) 1521 WP_060816121.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CO700_RS22920 (CO700_22920) ilvL 4680616..4680714 (+) 99 WP_001311244.1 ilv operon leader peptide -
  CO700_RS24635 ilvX 4680802..4680852 (+) 51 WP_202401504.1 peptide IlvX -
  CO700_RS22925 (CO700_22925) ilvG 4680855..4682501 (+) 1647 WP_012131118.1 acetolactate synthase 2 catalytic subunit -
  CO700_RS22930 (CO700_22930) ilvM 4682498..4682761 (+) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  CO700_RS22935 (CO700_22935) ilvE 4682779..4683708 (+) 930 WP_012131120.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55000.06 Da        Isoelectric Point: 7.6395

>NTDB_id=248147 CO700_RS22910 WP_060816121.1 4678744..4680264(-) (comM) [Citrobacter koseri strain FDAARGOS_393]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENTAEVGLISGEGCLIADHL
QTVCAFLEGKRDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTVQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKG
EDSATVKVRVISARKRQYERQGKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=248147 CO700_RS22910 WP_060816121.1 4678744..4680264(-) (comM) [Citrobacter koseri strain FDAARGOS_393]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCGCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCTGAAACGACGGTAAAGGAGGCCCGGGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCCCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCGGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
AGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCGATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATACGGCGGAAGTTGGGCTAATCAGCGGGGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACGTGATCTTGAGAAACCAGTCTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACCTGC
TGCTGATAGGCCCACCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGCGACAAA
GAAGCGCTGGAAAGTGCGGCGATTCTCAGCCTGGTGAACGCCGATACGGTACAAAGGCAGTGGAAACGGCGTCCTTTCCG
CTCGCCTCATCACAGCGCGTCATTAACGGCAATGGTAGGGGGAGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTCTGTTTCTGGATGAACTGCCTGAGTTTGAGCGACGCACGCTGGATGCGCTGCGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACCCGGGCAAAGATCACCTATCCTGCGCGCTTCCAACTGGTTGCAGCGATGAATCCCAG
CCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTTTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCGCCCGGTATACTCAGTCAGGCAGCGGTTAAAGGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGGGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAGTACTGTTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAAACGGAGAATATT
ACGCGCCTACATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGGCTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Haemophilus influenzae Rd KW20

58.398

100

0.591
  comM Glaesserella parasuis strain SC1401

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

47.2

98.814

0.466
  comM Legionella pneumophila strain ERS1305867

47.2

98.814

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.334

99.407

0.441

Multiple sequence alignment