Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CO700_RS00530 Genome accession   NZ_CP023527
Coordinates   116478..117014 (+) Length   178 a.a.
NCBI ID   WP_047459655.1    Uniprot ID   A0AAW7F306
Organism   Citrobacter koseri strain FDAARGOS_393     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 111478..122014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO700_RS00510 (CO700_00510) aphA 112037..112750 (+) 714 WP_012134616.1 acid phosphatase AphA -
  CO700_RS00515 (CO700_00515) - 112953..113309 (+) 357 WP_012134615.1 MmcQ/YjbR family DNA-binding protein -
  CO700_RS00520 (CO700_00520) uvrA 113405..116227 (-) 2823 WP_012134614.1 excinuclease ABC subunit UvrA -
  CO700_RS00530 (CO700_00530) ssb 116478..117014 (+) 537 WP_047459655.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CO700_RS00535 (CO700_00535) - 117276..117707 (+) 432 WP_012134612.1 universal stress protein -
  CO700_RS00540 (CO700_00540) - 118230..120938 (-) 2709 WP_058668412.1 cation-transporting P-type ATPase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19110.13 Da        Isoelectric Point: 5.2358

>NTDB_id=248127 CO700_RS00530 WP_047459655.1 116478..117014(+) (ssb) [Citrobacter koseri strain FDAARGOS_393]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=248127 CO700_RS00530 WP_047459655.1 116478..117014(+) (ssb) [Citrobacter koseri strain FDAARGOS_393]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGTCAGTTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACTGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCTCCGGCTGGCGGCAATATGGGCGGCGGTCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCACAGCAACAATCC
GCTCCGGCACCGTCTAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

46.111

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.371

Multiple sequence alignment