Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CO704_RS22585 Genome accession   NZ_CP023525
Coordinates   4722127..4722657 (-) Length   176 a.a.
NCBI ID   WP_061276009.1    Uniprot ID   -
Organism   Cedecea neteri strain FDAARGOS_392     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4717127..4727657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO704_RS22565 (CO704_22565) - 4718335..4719330 (-) 996 WP_061276002.1 alpha/beta hydrolase -
  CO704_RS22570 (CO704_22570) - 4719349..4720284 (-) 936 WP_061276004.1 aromatic alcohol reductase -
  CO704_RS22575 (CO704_22575) - 4720429..4721340 (+) 912 WP_061276005.1 LysR family transcriptional regulator -
  CO704_RS22580 (CO704_22580) - 4721391..4722008 (-) 618 WP_061276007.1 hypothetical protein -
  CO704_RS22585 (CO704_22585) ssb 4722127..4722657 (-) 531 WP_061276009.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CO704_RS22590 (CO704_22590) uvrA 4722892..4725723 (+) 2832 WP_061276011.1 excinuclease ABC subunit UvrA -
  CO704_RS22595 (CO704_22595) - 4725724..4726077 (-) 354 WP_061276018.1 MmcQ/YjbR family DNA-binding protein -
  CO704_RS22600 (CO704_22600) aphA 4726217..4726930 (-) 714 WP_061276020.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18775.77 Da        Isoelectric Point: 5.2456

>NTDB_id=248120 CO704_RS22585 WP_061276009.1 4722127..4722657(-) (ssb) [Cedecea neteri strain FDAARGOS_392]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=248120 CO704_RS22585 WP_061276009.1 4722127..4722657(-) (ssb) [Cedecea neteri strain FDAARGOS_392]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
TGGCGCAGTTGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTAGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAATACCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGCAAATGGACTGACCAGGCTGGCGTGGAAAAATACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGTGCACCGGCAGGCGGCAACGGCGGCCAGCAGCAGGGCAGTT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGAGCGCGCCA
GCGCCATCTAACGAACCACCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

55.801

100

0.574
  ssb Neisseria meningitidis MC58

47.753

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.778

100

0.386

Multiple sequence alignment