Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSHA_RS00665 Genome accession   NC_007481
Coordinates   139196..140707 (+) Length   503 a.a.
NCBI ID   WP_011326852.1    Uniprot ID   -
Organism   Pseudoalteromonas translucida     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 134196..145707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSHA_RS00620 (PSHAa0124) - 134196..134564 (+) 369 WP_011326846.1 YacL family protein -
  PSHA_RS00625 (PSHAa0125) - 134671..135294 (+) 624 WP_011326847.1 dUTP diphosphatase -
  PSHA_RS00630 (PSHAa0126) yrfG 135310..135957 (-) 648 WP_011326848.1 GMP/IMP nucleotidase -
  PSHA_RS00635 (PSHAa0127) nudE 136020..136592 (+) 573 WP_011326849.1 ADP compounds hydrolase NudE -
  PSHA_RS00640 (PSHAa0128) cysQ 136585..137370 (+) 786 WP_011326850.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PSHA_RS00660 (PSHAa0129) - 138548..139162 (+) 615 WP_011326851.1 trimeric intracellular cation channel family protein -
  PSHA_RS00665 (PSHAa0130) comM 139196..140707 (+) 1512 WP_011326852.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSHA_RS00670 (PSHAa0131) - 140704..141423 (-) 720 WP_011326853.1 response regulator transcription factor -
  PSHA_RS00675 (PSHAa0132) - 141653..144154 (-) 2502 WP_011326854.1 S9 family peptidase -
  PSHA_RS00680 (PSHAa0133) - 144239..145315 (+) 1077 WP_011326855.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55160.37 Da        Isoelectric Point: 7.6928

>NTDB_id=24785 PSHA_RS00665 WP_011326852.1 139196..140707(+) (comM) [Pseudoalteromonas translucida]
MSLARIYSRAQVGINAPEVIVEVHLGNGLPAFHIVGLPEASVKESKDRVRSALENSKFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCSDIHKYEFYGELALNGEIRGVNAILPSVLAAKEQDRCCFLPLANDSLASLVNGVKRKAVSSI
AEVWGDLLNQQPLPLNIQYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAIATAALYSIIGQSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRVARQMEFPAQFQLITALNPSPTGCHNDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLTSVELQSSKPEE
TSAVVRARVEAAYYLQLKRQGKVNARLNNKEMSIHCDLASTELQFLARASEKLALSPRSYHRIIKVARTISDLKGAERIS
LDELKEALNYRAFERLLAQLTKY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=24785 PSHA_RS00665 WP_011326852.1 139196..140707(+) (comM) [Pseudoalteromonas translucida]
ATGTCGTTAGCTCGCATATATTCTCGTGCTCAGGTGGGCATAAATGCCCCCGAAGTGATTGTTGAGGTGCATTTAGGTAA
TGGTTTGCCTGCTTTTCATATTGTCGGTTTGCCCGAGGCTTCGGTTAAAGAATCTAAAGACAGAGTGCGTAGCGCACTTG
AAAATTCTAAGTTTGGTTTTCCCGATCAACGTATTACTGTTAATTTAGCCCCTGCCGATTTACCAAAAGACGGTGGCCGA
TTCGATCTTGCTATTGCCGTAGGTATTTTAGTCGCCTCAGGGCAAATAGTGTGCTCTGACATTCATAAATATGAGTTTTA
TGGGGAGCTGGCACTTAACGGTGAGATACGTGGCGTAAATGCTATTTTGCCCTCGGTGCTTGCTGCTAAAGAGCAGGACC
GTTGCTGTTTTTTACCACTGGCAAATGATAGCTTAGCCAGTTTAGTTAACGGGGTTAAACGCAAAGCCGTAAGCTCTATT
GCAGAAGTGTGGGGCGATTTACTTAATCAGCAACCACTGCCGTTAAATATACAATACCCAGATTGTACGCAAGCTCCTGA
TTTTTTGCTTGATTTAAGTGATGTGAAAGGCCAGCCTGGGGCAAAGCGAGTACTCGAAATTGCCGCTGCAGGAGGCCATA
ACTTACTATTTTTAGGACCCCCTGGTACGGGTAAGTCAATGCTGGCTCAACGTATGGCAACCATTATGCCAACCATGTCA
GATGATGAAGCAATTGCTACTGCGGCGCTTTATTCTATTATTGGCCAGTCGATTGATTTAACTAATTGGCGACAACGGCC
ATTTCGCAATCCTCACCATACCTGCTCTGCCGTTGCATTAGTCGGTGGCTCGTCAAACCCTAAACCGGGTGAAATTTCAT
TGGCGCATAATGGCGTGCTTTTTTTAGATGAGTTGCCAGAGTTCGAACGTAAAGTGCTCGATTCGCTGCGTGAACCTATG
GAAACTGGTACTGTCACTATTTCGCGTGTGGCAAGGCAAATGGAGTTTCCGGCGCAGTTTCAGCTTATTACGGCGCTAAA
CCCCAGCCCTACAGGTTGCCATAATGATAAGCGGGCAACGCCTGATCAAGTAATGCGTTATTTGTCGCGTGTTTCGGGGC
CGTTTATTGACCGTATTGACTTACAAATTGAATTACCAAGGCTAACGAGTGTTGAGTTACAAAGTAGCAAACCCGAAGAA
ACCAGTGCAGTAGTAAGAGCGCGAGTAGAGGCTGCTTATTATTTGCAGCTAAAACGCCAAGGTAAAGTGAATGCGCGGTT
AAACAATAAAGAAATGAGTATACATTGTGATCTCGCTTCCACTGAGTTGCAGTTTTTAGCCAGAGCGAGTGAAAAACTGG
CATTATCGCCACGCTCATACCATAGAATAATTAAAGTAGCGCGTACTATTAGTGATTTAAAAGGGGCGGAGCGTATTAGC
TTAGATGAGCTAAAAGAAGCACTTAACTACCGCGCCTTTGAGCGCTTACTAGCGCAATTAACTAAGTACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.952

100

0.561
  comM Glaesserella parasuis strain SC1401

54.134

100

0.547
  comM Vibrio campbellii strain DS40M4

54.563

100

0.547
  comM Haemophilus influenzae Rd KW20

53.725

100

0.545
  comM Legionella pneumophila str. Paris

49.407

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.407

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.897

100

0.421

Multiple sequence alignment