Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   COP00_RS15845 Genome accession   NZ_CP023481
Coordinates   2997988..2998500 (-) Length   170 a.a.
NCBI ID   WP_048353847.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2992988..3003500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS15820 (COP00_15820) - 2993837..2993944 (-) 108 WP_411801405.1 hypothetical protein -
  COP00_RS15825 (COP00_15825) - 2994127..2994606 (+) 480 WP_048353848.1 spore coat protein -
  COP00_RS15830 (COP00_15830) - 2994667..2996112 (-) 1446 WP_082634678.1 SulP family inorganic anion transporter -
  COP00_RS15835 (COP00_15835) - 2996298..2997596 (+) 1299 WP_057957720.1 MFS transporter -
  COP00_RS15840 (COP00_15840) rpsR 2997705..2997944 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  COP00_RS15845 (COP00_15845) ssbA 2997988..2998500 (-) 513 WP_048353847.1 single-stranded DNA-binding protein SsbA Machinery gene
  COP00_RS15850 (COP00_15850) rpsF 2998546..2998833 (-) 288 WP_046129429.1 30S ribosomal protein S6 -
  COP00_RS15855 (COP00_15855) ychF 2998946..3000046 (-) 1101 WP_046129430.1 redox-regulated ATPase YchF -
  COP00_RS15860 (COP00_15860) - 3000236..3000442 (-) 207 WP_046129452.1 DUF951 domain-containing protein -
  COP00_RS15865 (COP00_15865) - 3000575..3001591 (-) 1017 WP_048406244.1 membrane protein -
  COP00_RS15870 (COP00_15870) yyaC 3002410..3003027 (+) 618 WP_048353845.1 spore protease YyaC -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18515.12 Da        Isoelectric Point: 4.6109

>NTDB_id=247525 COP00_RS15845 WP_048353847.1 2997988..2998500(-) (ssbA) [Bacillus glycinifermentans strain KBN06P03352]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVYVTEVQAESVQFLEPKGGGSGAGGYSGGQGGQYFGGEQNDQNPFGGGQSNQNRNQSNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=247525 COP00_RS15845 WP_048353847.1 2997988..2998500(-) (ssbA) [Bacillus glycinifermentans strain KBN06P03352]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGATCCAGAGCTTCGTTATACTCCCAGCGGTGCGGCAGTTGC
CACCTTTACGCTCGCTGTAAACCGTACGTTTACGAATCAGCAGGGCGAACGTGAAGCAGATTTCATCAACTGTGTCGTTT
GGAGAAGACAAGCTGAAAATGTTGCGAATTTCCTTAAAAAAGGAAGCCTTGCGGGTGTAGATGGCCGTTTGCAAACGAGG
AACTACGAAAATCAGCAAGGACAGCGTGTATATGTGACGGAAGTTCAAGCTGAAAGTGTTCAATTTTTGGAGCCTAAAGG
CGGCGGTTCTGGTGCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAGTACTTTGGCGGCGAACAAAACGATCAGAATCCAT
TTGGCGGCGGTCAGAGCAATCAGAATCGCAATCAAAGCAACAGCTTTAATGACGATCCATTTGCAAACGACGGCAAACCG
ATTGACATCTCAGATGACGACTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

83.721

100

0.847
  ssb Latilactobacillus sakei subsp. sakei 23K

60.116

100

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

34.615

100

0.371

Multiple sequence alignment