Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FORC72_RS17415 Genome accession   NZ_CP023472
Coordinates   3369559..3371082 (-) Length   507 a.a.
NCBI ID   WP_120459177.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3364559..3376082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS17395 (FORC72_3041) - 3365840..3366826 (+) 987 WP_020839880.1 serine/threonine protein kinase -
  FORC72_RS17400 (FORC72_3042) - 3366861..3367463 (+) 603 WP_025551223.1 thiol:disulfide interchange protein DsbA/DsbL -
  FORC72_RS17405 (FORC72_3043) - 3367505..3368383 (-) 879 WP_020904428.1 acyltransferase -
  FORC72_RS17410 (FORC72_3044) - 3368546..3369502 (+) 957 WP_120459176.1 DUF2860 domain-containing protein -
  FORC72_RS17415 comM 3369559..3371082 (-) 1524 WP_120459177.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FORC72_RS17420 (FORC72_3045) ilvG 3371547..3373193 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  FORC72_RS17425 (FORC72_3046) ilvM 3373204..3373488 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  FORC72_RS17430 (FORC72_3047) ilvE 3373501..3374439 (+) 939 WP_015297538.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55035.14 Da        Isoelectric Point: 9.0357

>NTDB_id=247358 FORC72_RS17415 WP_120459177.1 3369559..3371082(-) (comM) [Vibrio parahaemolyticus strain FORC_072]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNADQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKKRVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGTEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=247358 FORC72_RS17415 WP_120459177.1 3369559..3371082(-) (comM) [Vibrio parahaemolyticus strain FORC_072]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCAGCGGATTTACCTAAAGAAGGCGGCCGT
TTTGATTTGCCTATTGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGCTGATCAAGCAGCGTTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAACA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGAAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGTTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCGTCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACACGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGCCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCAAAAGGCACGTTGGCGGAAGGTGGTGATCGA
GGTGAGCCCACGGAACTCGTCAAAAAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTACTCGGCAGCCGTGAAATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTACATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCTCGCACGATAGCGGATTTAGAAGGTACTGAGCAG
ATTGAGCGTTCTCATTTGGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442

Multiple sequence alignment