Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CNO08_RS01680 Genome accession   NZ_CP023465
Coordinates   427765..429288 (-) Length   507 a.a.
NCBI ID   WP_036114996.1    Uniprot ID   A0A120AGS7
Organism   Lysobacter capsici strain KNU-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 422765..434288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNO08_RS26450 - 423229..423384 (-) 156 WP_187313323.1 hypothetical protein -
  CNO08_RS01660 (CNO08_01660) - 423515..424345 (-) 831 WP_096411916.1 AraC family transcriptional regulator -
  CNO08_RS01670 (CNO08_01670) - 425051..426148 (+) 1098 WP_096411923.1 GNAT family N-acetyltransferase -
  CNO08_RS01675 (CNO08_01675) - 426207..427610 (+) 1404 WP_157753741.1 FAD-binding oxidoreductase -
  CNO08_RS01680 (CNO08_01680) comM 427765..429288 (-) 1524 WP_036114996.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CNO08_RS01685 (CNO08_01685) - 429299..429565 (-) 267 WP_036114994.1 accessory factor UbiK family protein -
  CNO08_RS01690 (CNO08_01690) - 429896..430234 (+) 339 WP_036114992.1 P-II family nitrogen regulator -
  CNO08_RS01695 (CNO08_01695) - 430346..431242 (-) 897 WP_096411931.1 LysR family transcriptional regulator -
  CNO08_RS01700 (CNO08_01700) - 431421..432419 (+) 999 WP_096418076.1 YeiH family protein -
  CNO08_RS01705 (CNO08_01705) - 432929..434209 (+) 1281 WP_046658766.1 M12 family metallo-peptidase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53590.42 Da        Isoelectric Point: 8.5218

>NTDB_id=247228 CNO08_RS01680 WP_036114996.1 427765..429288(-) (comM) [Lysobacter capsici strain KNU-14]
MNLALVHSRARSGVRAPAVRVEVHLAGGLPNMSIVGLPEAAVREAKDRVRAAIQCAQFEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQIPLEALNGCEFLGELGLTGELRAIDGVLPAALAAADAGHRLVVPAGNGAEAALAGRVEARTGRTL
LEVCAMLSGQKSLPEAVALPVVRVAGPDMLDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEAE
ALETAAIASVSGGAHGRGLDPARWRERPFRSPHHTASAVALVGGGADPRPGEISLAHQGVLFLDELPEWERRALEVLREP
LESGVVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSGRCRCAGDAIRRYRARISGPLLDRIDLHIEVPRLPPSHLRP
DQPGGECSEAIRARVVLARQRQQARSGRINAQLSQAETSATCRLHERDHELLERAVESLQLSARSMHRILRVARTIADLA
GSEAIATAHLTEAIGYRRADRGLQSAA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=247228 CNO08_RS01680 WP_036114996.1 427765..429288(-) (comM) [Lysobacter capsici strain KNU-14]
ATGAATCTGGCACTCGTGCATAGCCGTGCGCGATCGGGCGTCCGTGCGCCCGCGGTGCGGGTCGAGGTCCATCTCGCCGG
CGGTTTGCCGAACATGTCGATCGTCGGCCTGCCCGAGGCGGCGGTGCGCGAAGCCAAGGACCGGGTGCGCGCGGCGATCC
AGTGCGCGCAGTTCGAATTCCCGCAGCGGCGCATCACCGTCAATCTGGCTCCGGCCGATCTGCCGAAGGACGGCGGCCGC
TACGACCTGGCGATCGCGCTCGGCATCCTCGCCGCGAGCGGACAGATTCCGCTGGAGGCCTTGAACGGTTGCGAGTTCCT
CGGCGAACTCGGCCTCACCGGCGAACTGCGCGCGATCGACGGCGTGCTGCCGGCGGCGCTGGCCGCGGCCGATGCGGGCC
ACCGGCTGGTGGTGCCGGCCGGCAACGGCGCCGAAGCCGCGCTCGCCGGCCGGGTCGAGGCGCGCACCGGCCGCACCTTG
CTGGAGGTGTGCGCGATGCTCAGCGGGCAAAAGTCCTTGCCCGAAGCCGTCGCCTTGCCGGTGGTGCGCGTCGCCGGGCC
GGACATGCTCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCGCTCGAAATCGCCGCGGCCGGCGGCCACCATCTGCTGC
TGATCGGCCCGCCGGGCTGCGGCAAGACTTTGTTGGCCTCGCGCCTGCCCGGGCTATTGCCCGAGGCCAGCGAAGCCGAA
GCTTTGGAAACTGCGGCGATCGCTTCGGTCAGCGGCGGCGCGCACGGACGCGGACTCGATCCGGCGCGCTGGCGCGAGCG
ACCGTTCCGATCGCCTCATCACACCGCCAGCGCGGTCGCCCTGGTCGGCGGCGGCGCCGATCCGCGCCCCGGCGAAATCT
CACTGGCCCATCAGGGCGTGCTGTTCCTCGACGAATTGCCCGAGTGGGAACGGCGCGCATTGGAAGTCCTGCGCGAACCG
CTGGAGTCGGGCGTGGTGACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTCCCGGCGCGGTTCCAGTTGGTCGCGGCGAT
GAACCCCTGCCCCTGCGGCTGGGCCGGCGACAGCAGCGGGCGCTGCCGTTGCGCCGGGGATGCGATCCGCCGCTACCGCG
CGCGCATCTCCGGTCCCTTGCTCGATCGCATCGACCTGCACATCGAGGTGCCGCGCCTGCCGCCCTCGCACCTGCGCCCG
GACCAGCCCGGCGGCGAATGCTCCGAAGCCATCCGCGCCCGCGTCGTGCTGGCGCGGCAACGGCAGCAAGCGCGCAGCGG
CCGCATCAACGCCCAGCTCAGTCAGGCCGAGACCAGCGCGACCTGCCGCCTGCACGAACGCGATCACGAACTGCTCGAAC
GCGCGGTCGAAAGCCTGCAACTGTCGGCGCGCTCGATGCACCGGATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCC
GGCAGCGAGGCGATCGCCACCGCGCATCTGACCGAGGCGATCGGCTATCGGCGCGCCGATCGCGGGCTTCAGTCGGCCGC
GTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120AGS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

99.803

0.55
  comM Vibrio campbellii strain DS40M4

53.755

99.803

0.536
  comM Glaesserella parasuis strain SC1401

52.529

100

0.533
  comM Haemophilus influenzae Rd KW20

52.148

100

0.527
  comM Legionella pneumophila str. Paris

50.199

99.014

0.497
  comM Legionella pneumophila strain ERS1305867

50.199

99.014

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.508

100

0.46

Multiple sequence alignment