Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCZ27_RS14385 Genome accession   NZ_CP023439
Coordinates   3292618..3293124 (-) Length   168 a.a.
NCBI ID   WP_096449252.1    Uniprot ID   -
Organism   Thauera sp. K11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3287618..3298124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ27_RS14360 (CCZ27_14360) - 3288066..3289121 (-) 1056 WP_232516425.1 efflux RND transporter periplasmic adaptor subunit -
  CCZ27_RS24350 - 3289214..3289528 (-) 315 WP_232516671.1 CbiX/SirB N-terminal domain-containing protein -
  CCZ27_RS14370 (CCZ27_14370) - 3289626..3290468 (-) 843 WP_096449246.1 tRNA threonylcarbamoyladenosine dehydratase -
  CCZ27_RS14375 (CCZ27_14375) - 3290640..3291452 (+) 813 WP_096449248.1 tetratricopeptide repeat protein -
  CCZ27_RS14380 (CCZ27_14380) - 3291442..3292413 (-) 972 WP_096449250.1 MBL fold metallo-hydrolase -
  CCZ27_RS14385 (CCZ27_14385) ssb 3292618..3293124 (-) 507 WP_096449252.1 single-stranded DNA-binding protein Machinery gene
  CCZ27_RS14390 (CCZ27_14390) - 3293180..3294394 (-) 1215 WP_232516426.1 MFS transporter -
  CCZ27_RS14395 (CCZ27_14395) uvrA 3294501..3297329 (+) 2829 WP_096449254.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18250.12 Da        Isoelectric Point: 5.3320

>NTDB_id=247166 CCZ27_RS14385 WP_096449252.1 3292618..3293124(-) (ssb) [Thauera sp. K11]
MASVNKVILIGNLGADPETRFAPSGDAICNIRLATTETWRDKNTGERRDATEWHRVSFYGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQSGQDRYTTEIRADEMKMLGRREGAGEAPMRGDDAGGGYDAPSPSRAPSAPAPASAPRSQPAPQPSSGGFG
DFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=247166 CCZ27_RS14385 WP_096449252.1 3292618..3293124(-) (ssb) [Thauera sp. K11]
ATGGCATCCGTGAACAAGGTCATCCTCATCGGCAACCTCGGCGCCGATCCCGAAACCCGCTTCGCCCCGTCCGGCGACGC
GATCTGCAACATCCGCCTCGCCACCACCGAAACCTGGCGCGACAAGAACACCGGGGAACGGCGCGATGCCACCGAATGGC
ACCGCGTGTCGTTCTACGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTACATCGAGGGC
AGCCTGCGCACGCGCAAATGGCAGGACCAGAGCGGCCAGGACCGCTACACGACCGAGATCCGAGCCGACGAGATGAAGAT
GCTGGGCCGCCGCGAAGGCGCGGGCGAGGCGCCGATGCGTGGTGACGATGCCGGCGGCGGCTACGACGCTCCGTCGCCGT
CGCGTGCGCCCTCGGCCCCGGCTCCGGCCTCGGCGCCGCGTTCGCAGCCCGCGCCGCAGCCGTCGTCCGGCGGCTTCGGC
GATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.692

100

0.625
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.548
  ssb Neisseria gonorrhoeae MS11

50.279

100

0.536
  ssb Neisseria meningitidis MC58

49.432

100

0.518

Multiple sequence alignment