Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CGZ65_RS10815 Genome accession   NZ_CP023429
Coordinates   2148462..2148749 (-) Length   95 a.a.
NCBI ID   WP_096296184.1    Uniprot ID   -
Organism   Neisseria weixii strain 10022     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2143462..2153749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ65_RS14355 - 2143528..2143686 (-) 159 WP_232507438.1 hypothetical protein -
  CGZ65_RS10785 (CGZ65_10785) aroG 2143788..2144831 (-) 1044 WP_096295810.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  CGZ65_RS15250 (CGZ65_10790) - 2145289..2145498 (+) 210 Protein_2208 IS630 transposase-related protein -
  CGZ65_RS14360 (CGZ65_10795) - 2145666..2145857 (+) 192 WP_096295811.1 hypothetical protein -
  CGZ65_RS15255 - 2145863..2146015 (+) 153 WP_415906985.1 transposase -
  CGZ65_RS15260 (CGZ65_10800) - 2146018..2146185 (-) 168 WP_415906955.1 integrase core domain-containing protein -
  CGZ65_RS10805 (CGZ65_10805) - 2146352..2147009 (+) 658 Protein_2212 IS1595 family transposase -
  CGZ65_RS14365 (CGZ65_10810) - 2147358..2148204 (+) 847 Protein_2213 IS5 family transposase -
  CGZ65_RS10815 (CGZ65_10815) comE 2148462..2148749 (-) 288 WP_096296184.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9986.68 Da        Isoelectric Point: 10.6062

>NTDB_id=247028 CGZ65_RS10815 WP_096296184.1 2148462..2148749(-) (comE) [Neisseria weixii strain 10022]
MKKIIFYALTTLVASVSAAAVNVNTASESELTALPGVGPAKAKAIVEYRKQHGNFKTLDELKNVKGIGEGIFSKLKNEAT
VAAPAKKTAQTAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=247028 CGZ65_RS10815 WP_096296184.1 2148462..2148749(-) (comE) [Neisseria weixii strain 10022]
ATGAAGAAAATCATCTTCTACGCACTGACCACTTTAGTTGCTTCCGTCTCTGCTGCCGCGGTGAACGTCAACACCGCTTC
CGAGAGTGAACTGACCGCACTGCCGGGAGTAGGTCCGGCCAAAGCCAAAGCGATTGTAGAATACCGCAAACAGCATGGTA
ACTTTAAGACCTTGGACGAACTGAAAAACGTCAAAGGTATTGGGGAAGGCATCTTCTCGAAACTGAAGAATGAAGCCACT
GTTGCTGCGCCTGCTAAGAAAACTGCGCAGACTGCGGTGAAAAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.172

91.579

0.505
  comE Neisseria gonorrhoeae MS11

55.172

91.579

0.505
  comE Neisseria gonorrhoeae MS11

55.172

91.579

0.505
  comE Neisseria gonorrhoeae MS11

55.172

91.579

0.505
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.807

87.368

0.453
  comEA Staphylococcus aureus N315

60.656

64.211

0.389
  comEA Staphylococcus aureus MW2

60.656

64.211

0.389

Multiple sequence alignment