Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CNX70_RS04620 Genome accession   NZ_CP023422
Coordinates   1055979..1057499 (-) Length   506 a.a.
NCBI ID   WP_096233746.1    Uniprot ID   -
Organism   Janthinobacterium svalbardensis strain PAMC 27463     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1050979..1062499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNX70_RS04610 (CNX70_04610) - 1054844..1055188 (-) 345 WP_071079548.1 DUF1840 domain-containing protein -
  CNX70_RS04615 (CNX70_04615) - 1055369..1055914 (-) 546 WP_096233745.1 hypothetical protein -
  CNX70_RS04620 (CNX70_04620) comM 1055979..1057499 (-) 1521 WP_096233746.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CNX70_RS04625 (CNX70_04625) - 1057611..1057859 (-) 249 WP_035824443.1 accessory factor UbiK family protein -
  CNX70_RS04630 (CNX70_04630) - 1058129..1058896 (+) 768 WP_096233747.1 TorF family putative porin -
  CNX70_RS04635 (CNX70_04635) - 1058908..1059246 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  CNX70_RS04640 (CNX70_04640) amt 1059258..1060793 (+) 1536 WP_096233748.1 ammonium transporter -
  CNX70_RS04645 (CNX70_04645) gshA 1060998..1062296 (+) 1299 WP_071079543.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54420.43 Da        Isoelectric Point: 8.2763

>NTDB_id=246961 CNX70_RS04620 WP_096233746.1 1055979..1057499(-) (comM) [Janthinobacterium svalbardensis strain PAMC 27463]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPDEQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRSQSGTPRAFILPQANADEAALVSDACIYP
AHSLLEVCAHFAAPASQTALQRHQPVLAAHAFAYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDAEALESAAVHSLGGHFKVEHWKRRPYRAPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHSRLSGPLLDRIDLQIEVAAMPPAA
LGRHAGAGESTQAIATRVAAAFALQLARQGKANQRLSSMEIEQHCRLEPHGEQLLHDAMARLHWSARTYHRVLRVARSIA
DLAGSPAITQPHVAEAIQYRRVLREM

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=246961 CNX70_RS04620 WP_096233746.1 1055979..1057499(-) (comM) [Janthinobacterium svalbardensis strain PAMC 27463]
ATGAGTCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAGGCACCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
TGGCTTGCCCTCGTTTACGATAGTTGGCCTGCCGGATACGGAAGTGAAGGAATCGCGCGACCGCGTCCGCGCCGCGCTGC
AAAACTGCGGCTTTGAGATGCCGGCGCGGCGCATCACGGCCAATCTGGCGCCGGCGGACTTGCCCAAGGAATCGGGCCGC
TTCGACTTGCCCATTGCGCTGGGCATCCTGGCCGCCTCCGGCCAGTTGCCAGATGAGCAATTACACCACTACGAATTCGC
GGGCGAACTGTCACTGTCGGGGCAGCTACGTCCCATCCGCGGCGCACTGGCCATGACCTTTGCCATGCAGCGCAGCCAAT
CGGGCACACCACGCGCCTTCATCCTGCCGCAGGCGAACGCGGACGAGGCGGCGCTGGTCAGCGATGCCTGCATCTATCCC
GCCCACAGCCTGCTCGAGGTCTGCGCGCATTTTGCCGCGCCCGCCAGCCAGACGGCCCTGCAACGCCATCAGCCTGTGCT
GGCAGCGCACGCTTTTGCGTATCCCGACTTTGCCGATGTGCAGGGGCAGCAGCAGGCGCGACGCGCACTGGAGGTGGCCG
CCGCAGGTGGCCACAACGTGCTGATGGTGGGGCCGCCTGGCGCGGGCAAGACCATGCTGGCCAGCCGGTTTCCCGGCGTG
CTGCCGCCCATGAGCGATGCAGAGGCGCTGGAATCGGCCGCCGTGCATTCGCTGGGCGGCCACTTCAAGGTGGAACACTG
GAAACGCCGCCCATATCGTGCCCCGCACCAGACGGCGTCCGGCGTGGCCCTGGTGGGCGGCGGCAACGTGCCGCGCCCAG
GAGAAATCTCGCTGGCGCACTGCGGTGTGTTGTTTCTCGATGAAATCGCCGAATTCCAGCGCCGGGTCCTCGATGTCTTG
CGCCAACCCATGGAATCGGGCGTCATCAGCATTTCGCGTGCGGCCCGCCAGGCCGAGTTTCCTGCCCGCTTTCAGTTGAT
CGCCGCCATGAATCCCTGCCCGTGCGGCTATCTGGGCCACGCTTCCGGCCGTTGCCGCTGTACGCCCGACGCCGTGCTGC
GCTATCACAGTCGCCTGTCCGGCCCGCTGCTCGACCGTATCGACCTGCAAATCGAAGTTGCCGCCATGCCACCGGCGGCG
CTGGGGCGGCACGCAGGCGCCGGCGAAAGCACGCAAGCCATCGCCACGCGGGTAGCGGCAGCCTTTGCCCTGCAACTGGC
ACGCCAGGGGAAAGCGAACCAGCGCCTGAGCAGCATGGAAATCGAACAGCATTGTCGCCTGGAGCCACATGGTGAGCAGT
TGCTGCATGACGCCATGGCACGCCTGCACTGGTCGGCGCGCACCTACCACCGGGTACTGCGCGTGGCGCGCAGCATCGCC
GACCTGGCAGGCAGCCCCGCAATCACGCAGCCGCATGTCGCCGAAGCGATTCAATACCGGCGCGTACTGCGTGAAATGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.816

100

0.543
  comM Vibrio cholerae strain A1552

53.333

100

0.538
  comM Glaesserella parasuis strain SC1401

52.362

100

0.526
  comM Haemophilus influenzae Rd KW20

51.176

100

0.516
  comM Legionella pneumophila str. Paris

48.713

99.802

0.486
  comM Legionella pneumophila strain ERS1305867

48.713

99.802

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445

Multiple sequence alignment