Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AVA_RS02570 Genome accession   NC_007413
Coordinates   639821..640186 (-) Length   121 a.a.
NCBI ID   WP_010995103.1    Uniprot ID   Q8YYC1
Organism   Trichormus variabilis ATCC 29413     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634821..645186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVA_RS02560 (Ava_0506) - 636332..639259 (-) 2928 WP_041456592.1 methyl-accepting chemotaxis protein -
  AVA_RS02565 (Ava_0507) - 639277..639807 (-) 531 WP_011317384.1 chemotaxis protein CheW -
  AVA_RS02570 (Ava_0508) pilH 639821..640186 (-) 366 WP_010995103.1 response regulator transcription factor Machinery gene
  AVA_RS02575 (Ava_0509) - 640459..641697 (-) 1239 WP_011317385.1 response regulator -
  AVA_RS02580 (Ava_0510) hmpF 642104..643855 (+) 1752 WP_011317386.1 pilus motility taxis protein HmpF -
  AVA_RS02585 (Ava_0511) tilS 643872..644900 (-) 1029 WP_011317387.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13396.55 Da        Isoelectric Point: 4.7266

>NTDB_id=24693 AVA_RS02570 WP_010995103.1 639821..640186(-) (pilH) [Trichormus variabilis ATCC 29413]
MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEPPDLVVLDIVMPKMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=24693 AVA_RS02570 WP_010995103.1 639821..640186(-) (pilH) [Trichormus variabilis ATCC 29413]
ATGAGTACAGTTCTGATTGTGGAAGACAGTCTTGCACAGAGGGAGATGATTACAGACCTCCTGAAAGCCAGTGGCTTAAC
AGTTACCCATGCAACTGACGGATTAGAAGCATTAGAGGCAATCAAAGAAGAACCTCCCGATCTCGTAGTCCTAGATATTG
TCATGCCCAAAATGAATGGCTACGAAGTTTGCCGTCGATTAAAGTCAGATCCCAAAACCCAAAATGTCCCGGTAGTGATG
TGTTCTTCTAAAGGAGAAGAATTTGACCGCTACTGGGGTATGAAACAGGGTGCGGATGCTTACATAGCAAAACCGTTTCA
ACCAACCGAATTGGTGGGAACAGTCAAACAACTACTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8YYC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75.207

100

0.752
  vicR Streptococcus mutans UA159

40

99.174

0.397
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372

Multiple sequence alignment