Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NWI_RS08190 | Genome accession | NC_007406 |
| Coordinates | 1709491..1709982 (-) | Length | 163 a.a. |
| NCBI ID | WP_011314833.1 | Uniprot ID | Q3SSB4 |
| Organism | Nitrobacter winogradskyi Nb-255 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1674548..1721658 | 1709491..1709982 | within | 0 |
Gene organization within MGE regions
Location: 1674548..1721658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWI_RS07985 (Nwi_1534) | pbpC | 1674548..1676668 (-) | 2121 | WP_011314801.1 | penicillin-binding protein 1C | - |
| NWI_RS07990 (Nwi_1535) | - | 1676665..1681884 (-) | 5220 | WP_011314802.1 | alpha-2-macroglobulin family protein | - |
| NWI_RS08000 | - | 1683321..1683512 (-) | 192 | WP_148203810.1 | hypothetical protein | - |
| NWI_RS08010 (Nwi_1538) | - | 1684049..1684282 (-) | 234 | WP_011314805.1 | hypothetical protein | - |
| NWI_RS08015 | - | 1684283..1684579 (-) | 297 | WP_041344918.1 | hypothetical protein | - |
| NWI_RS08020 (Nwi_1539) | - | 1684576..1684998 (-) | 423 | WP_011314806.1 | hypothetical protein | - |
| NWI_RS08025 (Nwi_1540) | - | 1684998..1685771 (-) | 774 | WP_011314807.1 | M15 family metallopeptidase | - |
| NWI_RS08035 (Nwi_1541) | - | 1686276..1687627 (+) | 1352 | WP_148203749.1 | IS3 family transposase | - |
| NWI_RS08040 (Nwi_1542) | - | 1687660..1688919 (-) | 1260 | WP_011314809.1 | phage major capsid protein | - |
| NWI_RS08045 (Nwi_1543) | - | 1688930..1689775 (-) | 846 | WP_011314810.1 | head maturation protease, ClpP-related | - |
| NWI_RS08050 (Nwi_1544) | - | 1689753..1691027 (-) | 1275 | WP_011314811.1 | phage portal protein | - |
| NWI_RS08055 (Nwi_1545) | - | 1691040..1692908 (-) | 1869 | WP_081431720.1 | terminase large subunit | - |
| NWI_RS08060 (Nwi_1546) | - | 1692841..1694253 (-) | 1413 | WP_011314813.1 | site-specific DNA-methyltransferase | - |
| NWI_RS08065 (Nwi_1547) | - | 1694228..1694698 (-) | 471 | WP_011314814.1 | P27 family phage terminase small subunit | - |
| NWI_RS18230 | - | 1694944..1695174 (-) | 231 | WP_244375005.1 | hypothetical protein | - |
| NWI_RS16440 (Nwi_1549) | - | 1695554..1696258 (-) | 705 | WP_011314816.1 | transcription termination/antitermination protein NusG | - |
| NWI_RS16445 (Nwi_1550) | - | 1696255..1697451 (-) | 1197 | WP_011314817.1 | helix-turn-helix domain-containing protein | - |
| NWI_RS08085 (Nwi_1551) | - | 1697448..1697840 (-) | 393 | WP_011314818.1 | ASCH domain-containing protein | - |
| NWI_RS08090 (Nwi_1552) | - | 1697837..1698571 (-) | 735 | WP_011314819.1 | hypothetical protein | - |
| NWI_RS18470 | - | 1698568..1698699 (-) | 132 | WP_283805214.1 | hypothetical protein | - |
| NWI_RS08100 (Nwi_1553) | - | 1698774..1699316 (-) | 543 | WP_011314820.1 | DUF7220 family protein | - |
| NWI_RS08105 (Nwi_1554) | - | 1699313..1701565 (-) | 2253 | WP_011314821.1 | MT-A70 family methyltransferase | - |
| NWI_RS08110 (Nwi_1555) | - | 1701562..1702095 (-) | 534 | WP_011314822.1 | HNH endonuclease | - |
| NWI_RS08115 (Nwi_1556) | - | 1702092..1702367 (-) | 276 | WP_011314823.1 | hypothetical protein | - |
| NWI_RS16450 (Nwi_1557) | - | 1702512..1703132 (-) | 621 | WP_011314824.1 | DUF2312 domain-containing protein | - |
| NWI_RS17590 (Nwi_1558) | - | 1703255..1703527 (+) | 273 | WP_011314825.1 | hypothetical protein | - |
| NWI_RS16455 (Nwi_1559) | - | 1703752..1704144 (-) | 393 | WP_011314826.1 | hypothetical protein | - |
| NWI_RS08135 (Nwi_1560) | - | 1704243..1704515 (+) | 273 | WP_011314827.1 | hypothetical protein | - |
| NWI_RS08145 | - | 1704823..1705197 (+) | 375 | WP_041344927.1 | helix-turn-helix domain-containing protein | - |
| NWI_RS08150 (Nwi_1561) | - | 1705281..1705526 (+) | 246 | WP_011314828.1 | hypothetical protein | - |
| NWI_RS08155 (Nwi_1562) | - | 1705612..1705842 (+) | 231 | WP_011314829.1 | hypothetical protein | - |
| NWI_RS08160 (Nwi_1563) | - | 1705839..1706108 (+) | 270 | WP_011314830.1 | hypothetical protein | - |
| NWI_RS08170 (Nwi_1564) | - | 1706301..1707560 (+) | 1260 | WP_011314831.1 | phage Gp37/Gp68 family protein | - |
| NWI_RS16910 (Nwi_1565) | - | 1708146..1709396 (+) | 1251 | WP_011314832.1 | tyrosine-type recombinase/integrase | - |
| NWI_RS08190 (Nwi_1566) | ssb | 1709491..1709982 (-) | 492 | WP_011314833.1 | single-stranded DNA-binding protein | Machinery gene |
| NWI_RS08195 (Nwi_1567) | - | 1710440..1711216 (+) | 777 | WP_011314834.1 | outer membrane protein | - |
| NWI_RS08200 (Nwi_1568) | uvrA | 1711725..1714706 (+) | 2982 | WP_011314835.1 | excinuclease ABC subunit UvrA | - |
| NWI_RS17920 | - | 1714742..1715029 (-) | 288 | WP_187148050.1 | hypothetical protein | - |
| NWI_RS16915 (Nwi_1569) | - | 1715028..1715564 (+) | 537 | WP_347335886.1 | BA14K family protein | - |
| NWI_RS08210 (Nwi_1571) | - | 1716361..1720158 (+) | 3798 | WP_011314838.1 | vitamin B12-dependent ribonucleotide reductase | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17728.66 Da Isoelectric Point: 8.0235
>NTDB_id=24688 NWI_RS08190 WP_011314833.1 1709491..1709982(-) (ssb) [Nitrobacter winogradskyi Nb-255]
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSESWRDRTSGERKERTEWHRVVIFNEGLCKVVEQYLKKGSKVYV
EGQLQTRKWTDQNGVEKYSTEVVLQNFNSTLTMLDGRNSGGGGNFGPDDAGSGFGSGSPSGAAPRRAAPASSHRGDMDDD
IPF
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSESWRDRTSGERKERTEWHRVVIFNEGLCKVVEQYLKKGSKVYV
EGQLQTRKWTDQNGVEKYSTEVVLQNFNSTLTMLDGRNSGGGGNFGPDDAGSGFGSGSPSGAAPRRAAPASSHRGDMDDD
IPF
Nucleotide
Download Length: 492 bp
>NTDB_id=24688 NWI_RS08190 WP_011314833.1 1709491..1709982(-) (ssb) [Nitrobacter winogradskyi Nb-255]
ATGGCGGGTAGCGTGAACAAGGTTATTCTGATCGGCAATCTCGGCGCCGACCCGGAGATCAAGCGGACTCAGGACGGACG
CCCGATCGCCAACCTGCGGATCGCCACCTCGGAAAGCTGGCGCGACAGAACGAGCGGCGAGCGCAAGGAAAGGACGGAGT
GGCACCGAGTCGTGATTTTCAACGAAGGTCTCTGCAAGGTTGTTGAGCAGTATTTGAAGAAAGGCTCGAAGGTCTACGTC
GAGGGACAGTTGCAGACCCGTAAGTGGACCGACCAGAACGGCGTCGAGAAATACTCCACCGAAGTGGTTCTTCAGAACTT
CAATTCGACGCTGACGATGCTCGATGGCCGCAATAGCGGCGGGGGCGGCAATTTCGGACCTGACGATGCCGGCAGCGGCT
TCGGGTCCGGAAGTCCATCCGGCGCCGCGCCGCGCCGCGCCGCGCCCGCCAGCAGCCATCGCGGCGACATGGACGACGAC
ATTCCGTTTTAG
ATGGCGGGTAGCGTGAACAAGGTTATTCTGATCGGCAATCTCGGCGCCGACCCGGAGATCAAGCGGACTCAGGACGGACG
CCCGATCGCCAACCTGCGGATCGCCACCTCGGAAAGCTGGCGCGACAGAACGAGCGGCGAGCGCAAGGAAAGGACGGAGT
GGCACCGAGTCGTGATTTTCAACGAAGGTCTCTGCAAGGTTGTTGAGCAGTATTTGAAGAAAGGCTCGAAGGTCTACGTC
GAGGGACAGTTGCAGACCCGTAAGTGGACCGACCAGAACGGCGTCGAGAAATACTCCACCGAAGTGGTTCTTCAGAACTT
CAATTCGACGCTGACGATGCTCGATGGCCGCAATAGCGGCGGGGGCGGCAATTTCGGACCTGACGATGCCGGCAGCGGCT
TCGGGTCCGGAAGTCCATCCGGCGCCGCGCCGCGCCGCGCCGCGCCCGCCAGCAGCCATCGCGGCGACATGGACGACGAC
ATTCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
45.699 |
100 |
0.521 |
| ssb | Vibrio cholerae strain A1552 |
47.191 |
100 |
0.515 |
| ssb | Neisseria meningitidis MC58 |
40.884 |
100 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
40.884 |
100 |
0.454 |