Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CNR27_RS02920 Genome accession   NZ_CP023406
Coordinates   643699..645213 (-) Length   504 a.a.
NCBI ID   WP_096296864.1    Uniprot ID   A0A290XBK5
Organism   Luteimonas chenhongjianii strain 100111     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 638699..650213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNR27_RS02910 (CNR27_02910) aceA 639919..641250 (+) 1332 WP_096296862.1 isocitrate lyase -
  CNR27_RS02915 (CNR27_02915) - 641329..643422 (-) 2094 WP_096296863.1 S9 family peptidase -
  CNR27_RS02920 (CNR27_02920) comM 643699..645213 (-) 1515 WP_096296864.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CNR27_RS02925 (CNR27_02925) - 645223..645513 (-) 291 WP_096296865.1 accessory factor UbiK family protein -
  CNR27_RS02930 (CNR27_02930) - 645732..646070 (+) 339 WP_096008039.1 P-II family nitrogen regulator -
  CNR27_RS02935 (CNR27_02935) speE 646483..647334 (-) 852 WP_096296866.1 polyamine aminopropyltransferase -
  CNR27_RS02940 (CNR27_02940) speA 647623..649512 (+) 1890 WP_096296867.1 arginine decarboxylase -
  CNR27_RS15415 - 649525..649968 (-) 444 WP_158613480.1 EF-hand domain-containing protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 52825.74 Da        Isoelectric Point: 8.6043

>NTDB_id=246728 CNR27_RS02920 WP_096296864.1 643699..645213(-) (comM) [Luteimonas chenhongjianii strain 100111]
MGLALVHGRARAGIRAPEVKVEVHLGGGLPSMSIVGLPEAAVREAKDRVRAAIQCAQYEFPARRITVNLAPADLPKGGGR
FDLPIALGILAASGQIPAEALRDWEFLGELGLTGELRGIDGALPAALAVAGTGRSLLVPVANGAEAALASDVPVHTARTL
LEVCAMLGGRKTLPRATPPPQRALPSIDLRDVRGQTQARRALEIAAAGGHHLLFVGPPGCGKTLLASRLPGLLPPSSEAE
ALETAAVQSISGRGLDPTVWRARPFRSPHHTASAIALVGGGGEPRPGEVSLAHNGVLFLDELPEWSRQALEVLREPMESG
VVTISRAARQSEFPARFQLVAAMNPCPCGWAGDISGRCRCSADAIARYRARISGPLLDRIDLHVEVPRLPPAALRPDAPG
GEPSALVAARVSEARERQHARAGVLNARLDQSGTARDCRLAAADQALLERAIEALHLSARAMHRILRVARTIADLDGCKD
ISQAHLTEALGYRGISGSAEMGAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=246728 CNR27_RS02920 WP_096296864.1 643699..645213(-) (comM) [Luteimonas chenhongjianii strain 100111]
ATGGGACTTGCGCTCGTGCACGGACGTGCGCGCGCAGGCATCCGCGCCCCCGAGGTCAAGGTCGAAGTCCATCTCGGCGG
CGGTCTGCCCTCGATGTCGATCGTCGGATTGCCGGAAGCCGCGGTGCGGGAAGCCAAGGACCGGGTACGTGCCGCCATCC
AGTGCGCGCAGTACGAATTTCCCGCACGCCGGATCACCGTCAACCTTGCGCCTGCCGACCTGCCCAAGGGCGGCGGGCGC
TTCGACCTGCCGATCGCACTGGGAATCCTGGCCGCCAGCGGGCAGATTCCGGCCGAGGCACTGCGCGACTGGGAATTCCT
CGGTGAGCTGGGACTGACCGGCGAGCTGCGTGGCATCGACGGCGCACTGCCCGCTGCGCTCGCGGTCGCCGGCACCGGGC
GCTCACTGCTGGTGCCGGTGGCCAATGGCGCGGAGGCGGCGCTGGCCTCGGACGTGCCGGTGCATACCGCGCGCACGTTG
CTGGAGGTCTGCGCGATGCTCGGCGGGCGCAAGACCCTGCCCCGGGCCACGCCGCCACCGCAACGTGCATTGCCGTCGAT
CGATCTGCGCGATGTTCGTGGACAGACGCAGGCGCGCCGGGCGCTCGAGATCGCGGCGGCCGGCGGTCACCACCTGCTGT
TCGTGGGGCCGCCCGGCTGCGGCAAGACTCTGCTGGCTTCGCGCCTGCCCGGCCTGCTGCCGCCGTCGAGCGAGGCAGAG
GCGTTGGAAACCGCGGCGGTGCAGTCGATCAGCGGACGCGGTCTCGATCCCACCGTGTGGCGCGCGCGGCCATTCCGCAG
CCCGCATCACACCGCCAGCGCGATCGCGCTGGTCGGTGGCGGTGGTGAGCCGCGGCCCGGCGAGGTGTCCCTGGCGCACA
ACGGCGTGCTGTTTCTCGACGAGTTGCCCGAATGGAGCCGCCAGGCGCTGGAAGTGCTGCGTGAACCGATGGAGTCGGGC
GTCGTGACGATCTCCCGGGCCGCGCGCCAGAGCGAATTTCCGGCCCGCTTCCAGCTGGTGGCGGCGATGAATCCCTGCCC
ATGCGGCTGGGCCGGCGACATCTCCGGGCGCTGCCGCTGCTCGGCCGATGCCATCGCGCGCTACCGCGCGCGGATCTCCG
GTCCACTGCTGGACCGCATCGACCTGCACGTGGAAGTGCCCCGGTTGCCCCCCGCTGCGCTGCGACCCGACGCCCCCGGC
GGCGAGCCCAGCGCGCTCGTCGCTGCGCGCGTGAGCGAGGCGCGCGAGCGCCAGCACGCGCGTGCAGGTGTGCTCAACGC
CCGGCTCGACCAGAGCGGCACCGCCCGTGACTGTCGCCTCGCCGCCGCCGACCAGGCGTTGCTCGAGCGAGCGATCGAAG
CCCTGCACCTCTCGGCGCGCGCAATGCACCGCATCCTGCGCGTCGCCCGCACGATCGCCGACCTCGACGGCTGCAAGGAC
ATCAGCCAGGCGCACCTCACCGAAGCGCTCGGATATCGCGGGATCAGCGGCAGCGCCGAGATGGGCGCTGCCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290XBK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.183

99.603

0.54
  comM Vibrio cholerae strain A1552

54.728

98.611

0.54
  comM Glaesserella parasuis strain SC1401

53.785

99.603

0.536
  comM Vibrio campbellii strain DS40M4

54.326

98.611

0.536
  comM Legionella pneumophila str. Paris

51.411

98.413

0.506
  comM Legionella pneumophila strain ERS1305867

51.411

98.413

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.762

100

0.438

Multiple sequence alignment