Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CMV25_RS03565 Genome accession   NZ_CP023392
Coordinates   735753..736262 (-) Length   169 a.a.
NCBI ID   WP_096039601.1    Uniprot ID   A0A290PXP2
Organism   Lactococcus raffinolactis strain WiKim0068     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 730753..741262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV25_RS03530 (CMV25_03530) - 731106..731360 (-) 255 WP_061775372.1 DUF1912 family protein -
  CMV25_RS03535 (CMV25_03535) - 731404..731901 (-) 498 WP_061775371.1 GNAT family N-acetyltransferase -
  CMV25_RS03540 (CMV25_03540) rlmD 731898..733235 (-) 1338 WP_096039598.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  CMV25_RS03545 (CMV25_03545) recX 733272..734066 (+) 795 WP_096039599.1 recombination regulator RecX -
  CMV25_RS03550 (CMV25_03550) - 734093..734806 (-) 714 WP_096039600.1 pseudouridine synthase -
  CMV25_RS03555 (CMV25_03555) - 734972..735283 (+) 312 WP_061775367.1 DUF960 domain-containing protein -
  CMV25_RS03560 (CMV25_03560) rpsR 735459..735704 (-) 246 WP_003140392.1 30S ribosomal protein S18 -
  CMV25_RS03565 (CMV25_03565) ssb 735753..736262 (-) 510 WP_096039601.1 single-stranded DNA-binding protein Machinery gene
  CMV25_RS03570 (CMV25_03570) rpsF 736299..736598 (-) 300 WP_061775365.1 30S ribosomal protein S6 -
  CMV25_RS03575 (CMV25_03575) - 736794..737105 (-) 312 WP_096039602.1 hypothetical protein -
  CMV25_RS11340 - 737247..737591 (-) 345 WP_167372301.1 hypothetical protein -
  CMV25_RS03580 (CMV25_03580) - 737838..738254 (-) 417 WP_096039603.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18385.25 Da        Isoelectric Point: 4.8895

>NTDB_id=246592 CMV25_RS03565 WP_096039601.1 735753..736262(-) (ssb) [Lactococcus raffinolactis strain WiKim0068]
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRAFKNANGEREADFINVVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENAQGQRVYVTEVVADNFQMLESRSAREGGQQGGGYTPSQSQPTNSNFGGNQPSQTQSSPAIPDFGRDSDPFSGGTPM
NLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=246592 CMV25_RS03565 WP_096039601.1 735753..736262(-) (ssb) [Lactococcus raffinolactis strain WiKim0068]
ATGATTAATAATGTTGTTTTAGTAGGTCGTTTGACCAAAGACGTTGAACTTCGTTACACACCTGCCAATCAAGCAGTGGC
TACTTTTACCCTTGCGGTTAATCGTGCCTTCAAAAATGCTAATGGTGAGCGTGAAGCAGATTTCATTAATGTTGTCATCT
GGCGTCAAGCTGCAGAAAATCTAGCAAATTGGGCGAAAAAAGGTGCGCTTCTAGGCGTTACTGGTCGTATCCAAACGCGT
AATTATGAGAATGCTCAAGGTCAACGTGTTTACGTGACTGAAGTGGTTGCTGATAATTTCCAAATGTTAGAAAGTCGTAG
CGCGCGCGAAGGTGGTCAACAAGGTGGTGGTTACACACCTTCACAGTCTCAACCTACAAACTCAAACTTCGGTGGCAATC
AACCGTCACAAACTCAGAGCTCACCTGCCATTCCAGACTTTGGCCGCGATAGCGATCCGTTTTCTGGTGGCACACCCATG
AACTTGAGTGATGATGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290PXP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.429

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.114

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379
  ssb Vibrio cholerae strain A1552

34.239

100

0.373
  ssb Glaesserella parasuis strain SC1401

32.632

100

0.367

Multiple sequence alignment