Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TBD_RS01185 Genome accession   NC_007404
Coordinates   260725..262212 (-) Length   495 a.a.
NCBI ID   WP_011310750.1    Uniprot ID   Q3SM60
Organism   Thiobacillus denitrificans ATCC 25259     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 255725..267212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TBD_RS01175 (Tbd_0235) - 259225..259611 (+) 387 WP_011310748.1 rhodanese-like domain-containing protein -
  TBD_RS01180 (Tbd_0236) - 259697..260728 (-) 1032 WP_011310749.1 VIT1/CCC1 transporter family protein -
  TBD_RS01185 (Tbd_0237) comM 260725..262212 (-) 1488 WP_011310750.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TBD_RS01190 (Tbd_0238) - 262217..262480 (-) 264 WP_011310751.1 accessory factor UbiK family protein -
  TBD_RS01195 (Tbd_0239) - 262715..263485 (+) 771 WP_011310752.1 TorF family putative porin -
  TBD_RS01200 (Tbd_0240) - 263550..263888 (+) 339 WP_011310753.1 P-II family nitrogen regulator -
  TBD_RS01205 (Tbd_0241) - 263899..265305 (+) 1407 WP_011310754.1 ammonium transporter -
  TBD_RS01210 (Tbd_0242) folE 265418..266038 (-) 621 WP_011310755.1 GTP cyclohydrolase I FolE -
  TBD_RS01215 (Tbd_0243) - 266462..266851 (+) 390 WP_011310756.1 DUF4398 domain-containing protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 51956.27 Da        Isoelectric Point: 7.0429

>NTDB_id=24659 TBD_RS01185 WP_011310750.1 260725..262212(-) (comM) [Thiobacillus denitrificans ATCC 25259]
MGVAVVKSRALAGMNAPEVVVEAHLANGLPAFTLVGLPETEVKEARDRVRAAIQNAGYEFPARRITVNLAPADLPKESGR
FDLPIALAILAASGQAPGDKLKEAEFAGELALTGELRPVRGALAMALATRAAGCKLVLPAQSASEAALARGVETYGATSL
LEVCAWLAGQGTLCEAAADADSPAATYPDFADVKGQAGARRALEVAAAGGHSVLMAGPPGTGKSMLAARFPGILPAMDEA
EALEAAAVASLNGGFRPEHWGRRPYRAPHHTASAVALVGGGNNPRPGEISLAHHGVLFLDELPEFPRQVLEVLREPLESG
HITISRAARQADFPARFQLVAAMNPCPCGYLGHPSQACRDTPDQIARYRGRISGPLLDRIDIQISVPALTEDELLASAEG
ESSAEIRARVEAARARQMQRQGKANAALGTQDVERFCALDGAGEALLKQAIARLKLSARAYHRVLRLARSVADLAGSDAI
TTTHLAEAIQYRRQA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=24659 TBD_RS01185 WP_011310750.1 260725..262212(-) (comM) [Thiobacillus denitrificans ATCC 25259]
GTGGGCGTCGCCGTCGTCAAGAGCCGCGCGCTCGCCGGCATGAACGCGCCGGAGGTTGTCGTCGAGGCGCACCTCGCCAA
CGGCCTGCCCGCGTTCACGCTCGTCGGCCTGCCCGAGACCGAGGTCAAGGAGGCGCGCGACCGCGTGCGCGCGGCGATCC
AGAACGCCGGCTACGAGTTTCCGGCGCGGCGGATCACGGTCAATCTCGCGCCCGCCGACCTGCCCAAGGAATCGGGGCGC
TTCGATCTGCCGATCGCGCTCGCGATCCTCGCCGCATCCGGGCAGGCGCCGGGCGACAAACTCAAGGAGGCCGAATTTGC
CGGCGAACTCGCGCTGACCGGAGAACTGCGCCCGGTCCGCGGAGCGCTCGCGATGGCGTTGGCGACGCGCGCAGCCGGTT
GCAAGCTCGTTTTGCCGGCGCAGTCGGCCAGCGAGGCGGCGCTCGCGCGGGGCGTCGAAACCTATGGCGCGACGAGCCTG
CTCGAGGTCTGCGCGTGGCTCGCGGGTCAGGGCACGCTGTGCGAAGCGGCTGCCGACGCGGATTCGCCTGCCGCAACCTA
TCCCGATTTCGCCGACGTCAAAGGCCAGGCCGGCGCGCGGCGCGCGCTCGAAGTCGCGGCGGCCGGCGGCCACTCGGTTT
TGATGGCTGGCCCGCCCGGGACCGGCAAGTCGATGCTCGCCGCGCGCTTTCCCGGGATCCTGCCGGCAATGGACGAGGCC
GAGGCACTCGAGGCTGCGGCGGTCGCTTCGCTCAACGGCGGGTTCCGCCCCGAGCACTGGGGCCGCCGCCCCTACCGCGC
GCCTCACCACACGGCCTCGGCGGTCGCGCTGGTCGGCGGCGGCAACAACCCGCGTCCGGGCGAAATTTCGCTCGCCCACC
ACGGTGTGCTGTTCCTCGACGAGCTGCCCGAGTTTCCGCGCCAGGTGCTCGAAGTGCTGCGCGAGCCGCTCGAGAGCGGC
CACATCACGATCTCGCGCGCCGCGCGGCAGGCCGACTTTCCGGCGCGGTTTCAGCTGGTCGCCGCGATGAACCCCTGCCC
CTGCGGCTATCTCGGCCATCCGAGCCAGGCCTGCCGCGACACGCCCGACCAGATCGCGCGATACCGCGGCCGCATCTCGG
GGCCGCTGCTCGACCGCATCGACATCCAGATCAGCGTTCCGGCCTTGACCGAAGACGAGTTGTTGGCGAGCGCCGAGGGC
GAGTCGAGCGCCGAAATCCGCGCCCGCGTCGAGGCCGCGCGTGCGCGCCAGATGCAGCGCCAGGGCAAGGCCAACGCCGC
GCTCGGCACGCAGGACGTCGAGCGCTTCTGCGCGCTCGACGGCGCCGGCGAGGCGCTGCTCAAGCAGGCGATCGCACGAC
TCAAGCTCTCGGCCCGGGCTTATCACCGCGTGCTCCGGCTCGCGCGCAGCGTCGCGGATCTCGCGGGCAGCGACGCGATC
ACCACGACCCACCTCGCCGAGGCGATCCAATACCGGCGACAGGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3SM60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.131

100

0.554
  comM Vibrio campbellii strain DS40M4

54.747

100

0.547
  comM Haemophilus influenzae Rd KW20

52.505

100

0.529
  comM Glaesserella parasuis strain SC1401

51.303

100

0.517
  comM Legionella pneumophila str. Paris

50.6

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.6

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.4

100

0.459

Multiple sequence alignment