Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CMV05_RS01600 | Genome accession | NZ_CP023310 |
| Coordinates | 318632..319165 (+) | Length | 177 a.a. |
| NCBI ID | WP_013857892.1 | Uniprot ID | A0AAW8GW50 |
| Organism | Vibrio anguillarum strain VIB12 isolate Sea bass | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 313632..324165
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CMV05_RS01585 (CMV05_01585) | uvrA | 313721..316543 (-) | 2823 | WP_026029161.1 | excinuclease ABC subunit UvrA | - |
| CMV05_RS01590 (CMV05_01590) | galU | 316712..317581 (-) | 870 | WP_013857894.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| CMV05_RS01595 (CMV05_01595) | qstR | 317699..318346 (-) | 648 | WP_170895060.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| CMV05_RS01600 (CMV05_01600) | ssb | 318632..319165 (+) | 534 | WP_013857892.1 | single-stranded DNA-binding protein | Machinery gene |
| CMV05_RS01605 (CMV05_01605) | csrD | 319295..321283 (+) | 1989 | WP_096035929.1 | RNase E specificity factor CsrD | - |
| CMV05_RS01610 (CMV05_01610) | - | 321296..322738 (+) | 1443 | WP_096035930.1 | MSHA biogenesis protein MshI | - |
| CMV05_RS01615 (CMV05_01615) | gspM | 322735..323379 (+) | 645 | WP_017047102.1 | type II secretion system protein GspM | - |
| CMV05_RS01620 (CMV05_01620) | - | 323369..323695 (+) | 327 | WP_096035931.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19459.61 Da Isoelectric Point: 5.2257
>NTDB_id=245853 CMV05_RS01600 WP_013857892.1 318632..319165(+) (ssb) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQQSAPQQA
QPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQQSAPQQA
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=245853 CMV05_RS01600 WP_013857892.1 318632..319165(+) (ssb) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGCGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTGGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGCGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGTTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGCAGTCAGCTCCTCAACAGGCT
CAACCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGCGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTGGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGCGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGTTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGCAGTCAGCTCCTCAACAGGCT
CAACCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
84.916 |
100 |
0.859 |
| ssb | Glaesserella parasuis strain SC1401 |
54.974 |
100 |
0.593 |
| ssb | Neisseria meningitidis MC58 |
43.889 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
43.889 |
100 |
0.446 |