Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CMV05_RS01595 Genome accession   NZ_CP023310
Coordinates   317699..318346 (-) Length   215 a.a.
NCBI ID   WP_170895060.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 312699..323346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS01585 (CMV05_01585) uvrA 313721..316543 (-) 2823 WP_026029161.1 excinuclease ABC subunit UvrA -
  CMV05_RS01590 (CMV05_01590) galU 316712..317581 (-) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CMV05_RS01595 (CMV05_01595) qstR 317699..318346 (-) 648 WP_170895060.1 LuxR C-terminal-related transcriptional regulator Regulator
  CMV05_RS01600 (CMV05_01600) ssb 318632..319165 (+) 534 WP_013857892.1 single-stranded DNA-binding protein Machinery gene
  CMV05_RS01605 (CMV05_01605) csrD 319295..321283 (+) 1989 WP_096035929.1 RNase E specificity factor CsrD -
  CMV05_RS01610 (CMV05_01610) - 321296..322738 (+) 1443 WP_096035930.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25051.76 Da        Isoelectric Point: 8.4691

>NTDB_id=245852 CMV05_RS01595 WP_170895060.1 317699..318346(-) (qstR) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MRKANYTRTIYFLCLDKEQEHPYIDHLTDRLGLPIPKIEPETLRQAYCSDKHKILMIDHADYAQLQRRLGNCPLNSQHHE
TILINVLQRLTTNDLLTFGHLKGLFYKNDTLDKIAFGLGEIINGQNWLPRHAVSQLLHYYRYAFESHTAQVITDLTAREI
QILRCLQTGASNNQMSEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=245852 CMV05_RS01595 WP_170895060.1 317699..318346(-) (qstR) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGAGAAAAGCAAACTATACCCGCACCATTTACTTTCTCTGTTTAGATAAAGAGCAAGAACACCCTTATATTGACCATTT
AACCGATCGGCTTGGGCTGCCCATTCCTAAAATTGAGCCCGAAACCTTGCGCCAAGCGTATTGTTCAGATAAACACAAAA
TATTGATGATTGACCATGCCGATTATGCGCAGTTGCAACGACGCTTGGGAAACTGCCCATTAAACAGTCAGCATCATGAA
ACGATCCTCATCAATGTGTTGCAAAGATTAACCACGAATGACTTATTAACCTTTGGCCATTTAAAAGGGCTATTTTATAA
AAATGACACCTTAGATAAAATTGCATTCGGGCTTGGCGAAATCATTAATGGACAAAATTGGCTACCCAGACACGCTGTAA
GTCAGTTACTGCACTACTATCGCTACGCGTTTGAGTCCCATACTGCTCAAGTGATTACAGACTTAACCGCCCGCGAAATA
CAGATCCTCCGCTGCTTACAAACTGGCGCATCGAATAACCAAATGTCGGAAGATTTATTCATCAGTGAATTCACTGTCAA
ATCACATCTCTACCAAATATTCAAAAAGCTATCGGTCAAAAATAGGGTCCAAGCGATTGCGTGGGCCAATCAAAATATTC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

66.355

99.535

0.66
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.521

Multiple sequence alignment