Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CLJ08_RS12080 Genome accession   NZ_CP023299
Coordinates   2568354..2569841 (+) Length   495 a.a.
NCBI ID   WP_028688629.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain BS011     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2563354..2574841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLJ08_RS12060 (CLJ08_12060) - 2563560..2563919 (+) 360 WP_028688625.1 DUF2493 domain-containing protein -
  CLJ08_RS12065 (CLJ08_12065) - 2564181..2564663 (+) 483 WP_028688626.1 sigma-70 family RNA polymerase sigma factor -
  CLJ08_RS12070 (CLJ08_12070) - 2564660..2565601 (+) 942 WP_084941022.1 FecR domain-containing protein -
  CLJ08_RS12075 (CLJ08_12075) - 2565683..2568196 (+) 2514 WP_096048992.1 TonB-dependent siderophore receptor -
  CLJ08_RS12080 (CLJ08_12080) comM 2568354..2569841 (+) 1488 WP_028688629.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CLJ08_RS12085 (CLJ08_12085) - 2570168..2570419 (+) 252 WP_096048993.1 DUF2790 domain-containing protein -
  CLJ08_RS12090 (CLJ08_12090) - 2570451..2571467 (+) 1017 WP_096048994.1 alpha/beta hydrolase -
  CLJ08_RS12095 (CLJ08_12095) - 2571693..2573480 (+) 1788 WP_096048995.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  CLJ08_RS12100 (CLJ08_12100) - 2573484..2573762 (-) 279 WP_096048996.1 HigA family addiction module antitoxin -
  CLJ08_RS12105 (CLJ08_12105) - 2574459..2574743 (+) 285 WP_028688634.1 DUF6124 family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52883.63 Da        Isoelectric Point: 8.1417

>NTDB_id=245767 CLJ08_RS12080 WP_028688629.1 2568354..2569841(+) (comM) [Pseudomonas mosselii strain BS011]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVATLDDIECLGELALSGALRPVQGVLPAALAARDAGRALVVPRENAEEASLASGLVVYAMGHL
RELVAHLNGQPALSPYAANGLLLEQRPYPDLSEVQGQIAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQVQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSG
ETSASVGQRVAEARALQQRRQGCANAFLDLKGLRRHCPLEPVDQAWLEQACERLTLSLRAAHRLLKVARTLADLEGAQSI
ARAHLAEALQYRPGT

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=245767 CLJ08_RS12080 WP_028688629.1 2568354..2569841(+) (comM) [Pseudomonas mosselii strain BS011]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTGGGTGTGCAGGCCCCCGCCGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCACGCTTACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGCCTGGACTACCCGGCCCGGCGCATCACCCAGAGCCTCGCCCCCGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAATGGCCAGGTGCCGGTGGCCACCCTCGACGATATCGAATGCCT
GGGTGAGCTGGCCCTGTCGGGCGCCTTGCGCCCGGTACAGGGCGTGCTGCCTGCGGCATTGGCGGCCCGGGATGCGGGTC
GGGCGCTGGTGGTGCCACGGGAGAATGCCGAGGAGGCCAGCCTGGCCAGCGGCCTGGTGGTGTATGCGATGGGGCACCTG
CGCGAGCTGGTGGCCCACCTGAACGGCCAGCCCGCGCTGTCTCCCTACGCGGCCAATGGCCTGCTGCTGGAGCAACGCCC
CTATCCGGACCTCAGCGAAGTCCAGGGCCAGATCGCGGCCAAGCGCGCCCTGCTGGTAGCCGCGGCCGGTGCGCACAACC
TGTTGTTCACAGGTCCCCCGGGCACTGGCAAGACCTTGCTTGCCAGTCGTCTGCCCGGGCTGCTGCCGCCGCTGGACGAG
CGCGAGGCACTGGAGGTGGCGGCGATCCGCTCGGTCAGCGGCCACGCCCCGCTCGATAGCTGGCCACAGCGGCCGTTCCG
CCATCCGCACCATTCGGCCTCAGGCCCGGCGCTGGTCGGCGGCGGCAGCCGGCCGCAACCCGGCGAGATCACCCTGGCGC
ACCATGGCGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAACGGCGCGTGCTGGAGGTGCTGCGCGAACCGCTGGAGTCC
GGCGAGATCGTGGTGGCCCGGGCCAAGGACCGGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCCATGAACCCCTG
CCCCTGTGGCTACCTGGGCGACCCCACCGGCCGCTGCCGGTGCAGCAGCGAGCAGGTCCAGCGCTACCGCAACAAGCTGT
CCGGCCCGCTGCTCGACCGTATCGACCTGCACCTGACGGTGGCCCGGGAAAGTACCGTGCTGACCCACCAGCCCAGTGGC
GAGACCAGCGCCAGCGTTGGCCAGAGAGTGGCAGAGGCACGGGCGCTGCAGCAGCGCCGGCAGGGCTGCGCCAACGCCTT
CCTCGACCTCAAGGGGCTGCGTCGGCATTGCCCGCTGGAGCCGGTTGACCAGGCCTGGCTGGAGCAGGCCTGCGAACGGC
TGACACTGTCGTTGCGGGCGGCGCACCGGCTGCTGAAGGTCGCCCGCACGCTGGCGGACCTGGAGGGCGCGCAATCCATC
GCCAGGGCGCACCTGGCGGAAGCGTTGCAGTACCGACCCGGCACTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.89

100

0.556
  comM Glaesserella parasuis strain SC1401

54.491

100

0.552
  comM Vibrio campbellii strain DS40M4

54.949

100

0.549
  comM Vibrio cholerae strain A1552

54.545

100

0.545
  comM Legionella pneumophila str. Paris

48.387

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.387

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.211

100

0.479

Multiple sequence alignment