Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CKY39_RS01320 Genome accession   NZ_CP023284
Coordinates   290211..291755 (-) Length   514 a.a.
NCBI ID   WP_095743180.1    Uniprot ID   A0A250DDE1
Organism   Variovorax boronicumulans strain J1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 285211..296755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKY39_RS01310 (CKY39_01310) tagF 287466..288194 (+) 729 WP_095743178.1 type VI secretion system-associated protein TagF -
  CKY39_RS01315 (CKY39_01315) - 288231..290198 (+) 1968 WP_095743179.1 serine/threonine-protein kinase -
  CKY39_RS01320 (CKY39_01320) comM 290211..291755 (-) 1545 WP_095743180.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CKY39_RS01325 (CKY39_01325) - 291973..292839 (+) 867 WP_095743181.1 TorF family putative porin -
  CKY39_RS01330 (CKY39_01330) glnK 292910..293248 (+) 339 WP_056583732.1 P-II family nitrogen regulator -
  CKY39_RS01335 (CKY39_01335) - 293278..294702 (+) 1425 WP_095743182.1 ammonium transporter -
  CKY39_RS01340 (CKY39_01340) - 294940..295869 (+) 930 WP_095743183.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 53961.58 Da        Isoelectric Point: 8.3809

>NTDB_id=245722 CKY39_RS01320 WP_095743180.1 290211..291755(-) (comM) [Variovorax boronicumulans strain J1]
MSLSLVQSRALLGLEAAAVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPTNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIENARLAGHEFAGELSLSGELRPVRGALAMAVATYTQGTAVRLVLPLDSAQEAALVPGAQVYGA
RHLLDVVRQFVASGGGPVDASDDGWTRVRAAPGDGAPRYADLADVKGHTGAKRALEIAAAGGHSLLMVGEPGSGKSMLAH
RFAGLLPPMNVDEALESAAIASLDGRLAPERWMSRPTATPHHTASAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFTRA
ALEALREPLETGTITITRAAQRAEFPARFQLIAAMNPCPCPCGYLGSTLKPCRCTPERVARYQGKLSGPLLDRIDLHIEV
AAVSAPQLLDAPAGESTDSIRARVVGARDRALQRQGHANQALQGRAIDTHAVLDGPARQLLQQAAARLGWSARSTHRALK
VARTIADLAGQDAVQAAHVAEAVQYRRALRTGTP

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=245722 CKY39_RS01320 WP_095743180.1 290211..291755(-) (comM) [Variovorax boronicumulans strain J1]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGCTTGGAGGCCGCAGCCGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGCTGGTCGGGCTGGCCGAGACCGAGGTCAAGGAGGCGCGCGAACGCGTGCGCTCGGCGATCC
AGAACGCCGGGCTCGAATTTCCGACCAACAAGAAGATCGTGGTGAATCTTGCCCCGGCCGACCTGCCGAAGGACTCGGGC
CGCTTCGACCTGCCCATTGCCCTGGGCATCCTCGCGGCCAGCGGGCAGATCGAGAACGCGCGGCTGGCCGGCCACGAGTT
CGCCGGCGAGCTGTCGCTGTCGGGCGAACTGCGGCCCGTGCGCGGCGCGCTCGCGATGGCCGTGGCCACCTACACGCAAG
GCACGGCCGTGCGGCTGGTGCTGCCCCTGGACAGCGCCCAGGAGGCCGCGCTGGTGCCCGGCGCGCAGGTGTACGGGGCC
CGGCACCTGCTCGACGTGGTGCGCCAGTTCGTCGCCAGCGGCGGCGGGCCCGTCGATGCGAGCGACGACGGCTGGACCCG
CGTGCGCGCCGCCCCCGGCGACGGCGCCCCGCGCTATGCCGACCTGGCCGACGTCAAGGGCCACACCGGCGCAAAGCGCG
CCCTCGAGATTGCCGCGGCCGGCGGCCACAGCCTGCTCATGGTGGGCGAGCCGGGCTCGGGCAAGTCGATGCTCGCGCAC
CGCTTCGCCGGCCTGCTGCCGCCGATGAACGTGGACGAGGCACTGGAAAGCGCAGCCATCGCCAGCCTCGACGGCCGGCT
GGCGCCCGAGCGATGGATGAGCCGCCCGACGGCCACGCCGCATCACACGGCGAGCGCGGTGGCGCTGGTGGGCGGCGGCT
CGCCGCCCCGGCCGGGCGAGATCTCGCGCGCGCACCACGGCGTGCTGTTTTTGGATGAATTCCCCGAGTTCACGCGCGCC
GCGCTCGAAGCGCTGCGCGAGCCGCTGGAGACCGGCACCATCACGATCACCCGCGCCGCCCAGCGCGCGGAGTTTCCGGC
GCGCTTCCAGCTCATCGCCGCGATGAACCCCTGCCCCTGCCCCTGCGGCTACCTCGGCTCCACGCTGAAGCCCTGCCGCT
GCACGCCCGAGCGCGTCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACATCGAGGTG
GCGGCCGTGTCGGCGCCGCAGCTGCTCGATGCGCCGGCGGGCGAATCGACCGACAGCATCCGCGCGCGCGTGGTGGGCGC
ACGCGACCGCGCGCTGCAACGCCAGGGCCATGCGAACCAGGCGCTGCAGGGCCGCGCGATCGACACGCACGCCGTGCTCG
ACGGCCCCGCGCGTCAGCTGCTGCAGCAGGCGGCCGCGCGGCTGGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTGAAG
GTGGCGCGCACCATCGCCGACCTCGCGGGGCAGGACGCGGTGCAGGCGGCGCATGTGGCAGAGGCGGTGCAGTACCGCCG
CGCATTGCGCACCGGCACGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-405)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A250DDE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.606

98.833

0.49
  comM Vibrio campbellii strain DS40M4

48.622

98.833

0.481
  comM Glaesserella parasuis strain SC1401

48.431

99.222

0.481
  comM Legionella pneumophila strain ERS1305867

47.758

99.805

0.477
  comM Legionella pneumophila str. Paris

47.758

99.805

0.477
  comM Haemophilus influenzae Rd KW20

47.266

99.611

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.107

100

0.432

Multiple sequence alignment