Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CLI64_RS12835 Genome accession   NZ_CP023278
Coordinates   3123926..3124291 (-) Length   121 a.a.
NCBI ID   WP_103137596.1    Uniprot ID   -
Organism   Nostoc sp. CENA543     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3118926..3129291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI64_RS12825 (CLI64_12745) - 3120477..3123365 (-) 2889 WP_103137594.1 methyl-accepting chemotaxis protein -
  CLI64_RS12830 (CLI64_12750) - 3123382..3123912 (-) 531 WP_103137595.1 chemotaxis protein CheW -
  CLI64_RS12835 (CLI64_12755) pilH 3123926..3124291 (-) 366 WP_103137596.1 response regulator transcription factor Machinery gene
  CLI64_RS12840 (CLI64_12760) - 3124506..3125645 (-) 1140 WP_103137597.1 response regulator -
  CLI64_RS12845 (CLI64_12765) hmpF 3126114..3127865 (+) 1752 WP_103137598.1 pilus motility taxis protein HmpF -
  CLI64_RS12850 (CLI64_12770) tilS 3127942..3129000 (-) 1059 WP_103137599.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13439.57 Da        Isoelectric Point: 4.8948

>NTDB_id=245709 CLI64_RS12835 WP_103137596.1 3123926..3124291(-) (pilH) [Nostoc sp. CENA543]
MSTVLIVEDSLAQREMITDLLKASGLKVTHATDGLEALESIQTEPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=245709 CLI64_RS12835 WP_103137596.1 3123926..3124291(-) (pilH) [Nostoc sp. CENA543]
ATGAGTACAGTTTTAATTGTGGAAGACAGTCTTGCCCAAAGGGAGATGATTACAGACCTCCTGAAAGCCAGTGGTTTAAA
AGTCACCCATGCCACTGACGGACTAGAAGCATTGGAGTCAATTCAAACTGAACCTCCTGATCTGGTGGTTTTAGATATTG
TCATGCCCCGCATGAATGGCTACGAAGTTTGTCGGCGATTAAAGTCAGACCCCAAAACTCAAAACGTTCCCGTCGTCATG
TGTTCTTCTAAAGGAGAAGAATTTGACCGCTACTGGGGGATGAAACAAGGGGCGGATGCTTACATAGCTAAACCGTTTCA
ACCAACCGAGTTGGTGGGAACAGTCAAACAACTGCTGCGAGGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372

Multiple sequence alignment