Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CLM71_RS21535 Genome accession   NZ_CP023268
Coordinates   4500117..4500656 (-) Length   179 a.a.
NCBI ID   WP_015962066.1    Uniprot ID   -
Organism   Serratia sp. MYb239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4495117..4505656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM71_RS21510 (CLM71_21430) - 4496335..4496961 (-) 627 WP_105232813.1 TetR/AcrR family transcriptional regulator -
  CLM71_RS21515 (CLM71_21435) - 4496958..4497353 (-) 396 WP_105232814.1 DoxX family protein -
  CLM71_RS24345 - 4497962..4499113 (+) 1152 WP_105232815.1 HNH endonuclease signature motif containing protein -
  CLM71_RS21525 (CLM71_21445) - 4499123..4499587 (+) 465 WP_105232816.1 YrhA family protein -
  CLM71_RS21530 (CLM71_21450) - 4499642..4499944 (-) 303 Protein_4197 Presumed portal vertex protein -
  CLM71_RS21535 (CLM71_21455) ssb 4500117..4500656 (-) 540 WP_015962066.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CLM71_RS21540 (CLM71_21460) uvrA 4500925..4503753 (+) 2829 WP_105232817.1 excinuclease ABC subunit UvrA -
  CLM71_RS21545 (CLM71_21465) - 4503972..4505024 (+) 1053 WP_105232818.1 NAD(P)-dependent alcohol dehydrogenase -
  CLM71_RS21550 (CLM71_21470) maa 4505059..4505616 (-) 558 WP_105232819.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18911.81 Da        Isoelectric Point: 5.2358

>NTDB_id=245600 CLM71_RS21535 WP_015962066.1 4500117..4500656(-) (ssb) [Serratia sp. MYb239]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANMTLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGQDRYTTEVVVNVGGSMQMLGGRQGGGGAPAGGGQGGQGGWGQPQQPQGGNQFSGGQQQQSRPAPSS
APAASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=245600 CLM71_RS21535 WP_015962066.1 4500117..4500656(-) (ssb) [Serratia sp. MYb239]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGCCAAGACCCCGAAGTCCGTTACATGCCGAATGG
TGGCGCGGTCGCCAACATGACCCTGGCTACCTCCGAAAGCTGGCGCGATAAAGCGACCGGCGAGCAGAAAGAAAAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGCTCGCAGGTGTATATC
GAAGGTTCCCTGCAGACCCGCAAATGGACCGATCAGAGCGGTCAGGACCGTTACACCACCGAAGTGGTGGTAAACGTCGG
CGGTTCCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGGTGCACCGGCAGGCGGTGGTCAGGGCGGCCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAACAGCAGTCGCGCCCAGCGCCAAGCAGC
GCGCCGGCGGCCAGCAGCAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.863

100

0.765
  ssb Glaesserella parasuis strain SC1401

59.043

100

0.62
  ssb Neisseria meningitidis MC58

45.989

100

0.48
  ssb Neisseria gonorrhoeae MS11

45.989

100

0.48
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.288

98.883

0.369

Multiple sequence alignment