Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | CJ017_RS06055 | Genome accession | NZ_CP023076 |
| Coordinates | 1235824..1236696 (+) | Length | 290 a.a. |
| NCBI ID | WP_031786943.1 | Uniprot ID | - |
| Organism | Staphylococcus argenteus strain XNO62 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1199228..1281598 | 1235824..1236696 | within | 0 |
Gene organization within MGE regions
Location: 1199228..1281598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJ017_RS05890 (CJ017_05870) | - | 1199383..1199586 (-) | 204 | WP_001198027.1 | TM2 domain-containing protein | - |
| CJ017_RS05895 (CJ017_05875) | - | 1199887..1200375 (+) | 489 | WP_031787794.1 | peptide deformylase | - |
| CJ017_RS05900 (CJ017_05880) | fmt | 1200368..1201303 (+) | 936 | WP_000161302.1 | methionyl-tRNA formyltransferase | - |
| CJ017_RS05905 (CJ017_05885) | rsmB | 1201300..1202607 (+) | 1308 | WP_031787795.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| CJ017_RS05910 (CJ017_05890) | rlmN | 1202610..1203704 (+) | 1095 | WP_000626892.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| CJ017_RS05915 (CJ017_05895) | - | 1203711..1204454 (+) | 744 | WP_000888496.1 | protein-serine/threonine phosphatase Stp1 | - |
| CJ017_RS05920 (CJ017_05900) | pknB | 1204451..1206445 (+) | 1995 | WP_031787796.1 | serine/threonine protein kinase Stk1 | - |
| CJ017_RS05925 (CJ017_05905) | rsgA | 1206712..1207587 (+) | 876 | WP_000847920.1 | ribosome small subunit-dependent GTPase A | - |
| CJ017_RS05930 (CJ017_05910) | rpe | 1207588..1208232 (+) | 645 | WP_031787797.1 | ribulose-phosphate 3-epimerase | - |
| CJ017_RS05935 (CJ017_05915) | - | 1208239..1208883 (+) | 645 | WP_031787798.1 | thiamine diphosphokinase | - |
| CJ017_RS05940 (CJ017_05920) | rpmB | 1209133..1209321 (-) | 189 | WP_000517908.1 | 50S ribosomal protein L28 | - |
| CJ017_RS05945 (CJ017_05925) | - | 1209765..1210139 (+) | 375 | WP_031787799.1 | Asp23/Gls24 family envelope stress response protein | - |
| CJ017_RS05950 (CJ017_05930) | fakA | 1210154..1211800 (+) | 1647 | WP_031787800.1 | fatty acid kinase catalytic subunit FakA | - |
| CJ017_RS05955 (CJ017_05935) | recG | 1211974..1214034 (+) | 2061 | WP_031787801.1 | ATP-dependent DNA helicase RecG | - |
| CJ017_RS05960 (CJ017_05940) | fapR | 1214439..1215011 (+) | 573 | WP_072292002.1 | transcription factor FapR | - |
| CJ017_RS05965 (CJ017_05945) | plsX | 1215016..1216002 (+) | 987 | WP_000239751.1 | phosphate acyltransferase PlsX | - |
| CJ017_RS05970 (CJ017_05950) | fabD | 1215995..1216921 (+) | 927 | WP_031787802.1 | ACP S-malonyltransferase | - |
| CJ017_RS05975 (CJ017_05955) | fabG | 1216914..1217648 (+) | 735 | WP_000167268.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| CJ017_RS05980 (CJ017_05960) | - | 1218118..1218351 (+) | 234 | WP_000426914.1 | acyl carrier protein | - |
| CJ017_RS05985 (CJ017_05965) | rnc | 1218467..1219198 (+) | 732 | WP_000043235.1 | ribonuclease III | - |
| CJ017_RS05990 (CJ017_05970) | smc | 1219330..1222899 (+) | 3570 | WP_031788253.1 | chromosome segregation protein SMC | - |
| CJ017_RS05995 (CJ017_05975) | ftsY | 1222896..1224146 (+) | 1251 | WP_031788254.1 | signal recognition particle-docking protein FtsY | - |
| CJ017_RS06000 (CJ017_05980) | - | 1224133..1224465 (+) | 333 | WP_000531321.1 | putative DNA-binding protein | - |
| CJ017_RS06005 (CJ017_05985) | ffh | 1224490..1225857 (+) | 1368 | WP_000863483.1 | signal recognition particle protein | - |
| CJ017_RS06010 (CJ017_05990) | rpsP | 1226186..1226461 (+) | 276 | WP_000268754.1 | 30S ribosomal protein S16 | - |
| CJ017_RS06015 (CJ017_05995) | rimM | 1226648..1227151 (+) | 504 | WP_001261978.1 | ribosome maturation factor RimM | - |
| CJ017_RS06020 (CJ017_06000) | trmD | 1227151..1227888 (+) | 738 | WP_031786939.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| CJ017_RS06025 (CJ017_06005) | rplS | 1227991..1228341 (+) | 351 | WP_000181404.1 | 50S ribosomal protein L19 | - |
| CJ017_RS06030 (CJ017_06010) | - | 1228583..1231189 (-) | 2607 | WP_031786940.1 | YfhO family protein | - |
| CJ017_RS06035 (CJ017_06015) | ylqF | 1231589..1232473 (+) | 885 | WP_031786941.1 | ribosome biogenesis GTPase YlqF | - |
| CJ017_RS06040 (CJ017_06020) | - | 1232457..1233224 (+) | 768 | WP_031786942.1 | ribonuclease HII | - |
| CJ017_RS06045 (CJ017_06025) | sucC | 1233333..1234499 (+) | 1167 | WP_001020805.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| CJ017_RS06050 (CJ017_06030) | sucD | 1234521..1235429 (+) | 909 | WP_033859080.1 | succinate--CoA ligase subunit alpha | - |
| CJ017_RS06055 (CJ017_06035) | dprA | 1235824..1236696 (+) | 873 | WP_031786943.1 | DNA-processing protein DprA | Machinery gene |
| CJ017_RS06060 (CJ017_06040) | topA | 1236870..1238945 (+) | 2076 | WP_072324151.1 | type I DNA topoisomerase | - |
| CJ017_RS06065 (CJ017_06045) | trmFO | 1239101..1240408 (+) | 1308 | WP_000195261.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| CJ017_RS06070 (CJ017_06050) | xerC | 1240823..1241719 (+) | 897 | WP_031786945.1 | tyrosine recombinase XerC | - |
| CJ017_RS06075 (CJ017_06055) | hslV | 1241716..1242261 (+) | 546 | WP_000072683.1 | ATP-dependent protease subunit HslV | - |
| CJ017_RS06080 (CJ017_06060) | hslU | 1242326..1243729 (+) | 1404 | WP_000381629.1 | ATP-dependent protease ATPase subunit HslU | - |
| CJ017_RS06085 (CJ017_06065) | codY | 1243754..1244527 (+) | 774 | WP_000055333.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| CJ017_RS06090 (CJ017_06070) | rpsB | 1244804..1245571 (+) | 768 | WP_000268484.1 | 30S ribosomal protein S2 | - |
| CJ017_RS06095 (CJ017_06075) | - | 1245623..1245718 (+) | 96 | WP_225995268.1 | hypothetical protein | - |
| CJ017_RS06100 (CJ017_06080) | tsf | 1245753..1246634 (+) | 882 | WP_031786946.1 | translation elongation factor Ts | - |
| CJ017_RS06105 (CJ017_06085) | pyrH | 1246771..1247493 (+) | 723 | WP_000057330.1 | UMP kinase | - |
| CJ017_RS06110 (CJ017_06090) | frr | 1247512..1248066 (+) | 555 | WP_001280034.1 | ribosome recycling factor | - |
| CJ017_RS06115 (CJ017_06095) | - | 1248427..1249197 (+) | 771 | WP_000473698.1 | isoprenyl transferase | - |
| CJ017_RS06120 (CJ017_06100) | - | 1249204..1249986 (+) | 783 | WP_000868415.1 | phosphatidate cytidylyltransferase | - |
| CJ017_RS06125 (CJ017_06105) | rseP | 1250197..1251483 (+) | 1287 | WP_031786947.1 | RIP metalloprotease RseP | - |
| CJ017_RS06130 (CJ017_06110) | - | 1251503..1253206 (+) | 1704 | WP_031786948.1 | proline--tRNA ligase | - |
| CJ017_RS06135 (CJ017_06115) | - | 1253480..1257790 (+) | 4311 | WP_078097697.1 | PolC-type DNA polymerase III | - |
| CJ017_RS06145 (CJ017_06125) | rimP | 1258066..1258533 (+) | 468 | WP_031786950.1 | ribosome maturation factor RimP | - |
| CJ017_RS06150 (CJ017_06130) | nusA | 1258554..1259729 (+) | 1176 | WP_000097470.1 | transcription termination factor NusA | - |
| CJ017_RS06155 (CJ017_06135) | rnpM | 1259750..1260034 (+) | 285 | WP_031786951.1 | RNase P modulator RnpM | - |
| CJ017_RS06160 (CJ017_06140) | - | 1260031..1260348 (+) | 318 | WP_000021269.1 | YlxQ family RNA-binding protein | - |
| CJ017_RS06165 (CJ017_06145) | infB | 1260353..1262479 (+) | 2127 | WP_000043647.1 | translation initiation factor IF-2 | - |
| CJ017_RS06170 (CJ017_06150) | rbfA | 1262808..1263158 (+) | 351 | WP_000097321.1 | 30S ribosome-binding factor RbfA | - |
| CJ017_RS06175 (CJ017_06155) | truB | 1263330..1264247 (+) | 918 | WP_000282309.1 | tRNA pseudouridine(55) synthase TruB | - |
| CJ017_RS06180 (CJ017_06160) | ribF | 1264262..1265233 (+) | 972 | WP_031786952.1 | riboflavin biosynthesis protein RibF | - |
| CJ017_RS06185 (CJ017_06165) | rpsO | 1265348..1265617 (+) | 270 | WP_001018327.1 | 30S ribosomal protein S15 | - |
| CJ017_RS06190 (CJ017_06170) | pnp | 1265984..1268080 (+) | 2097 | WP_000076680.1 | polyribonucleotide nucleotidyltransferase | - |
| CJ017_RS06200 (CJ017_06180) | rnjB | 1268323..1269996 (+) | 1674 | WP_000052592.1 | ribonuclease J2 | - |
| CJ017_RS06205 (CJ017_06185) | - | 1270268..1272640 (+) | 2373 | WP_031786953.1 | FtsK/SpoIIIE family DNA translocase | - |
| CJ017_RS06210 (CJ017_06190) | - | 1272644..1273357 (+) | 714 | WP_001293301.1 | GntR family transcriptional regulator | - |
| CJ017_RS06215 (CJ017_06195) | yfmF | 1273388..1274653 (+) | 1266 | WP_031786954.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| CJ017_RS06220 (CJ017_06200) | yfmH | 1274653..1275939 (+) | 1287 | WP_031786955.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| CJ017_RS06225 (CJ017_06205) | ymfI | 1275939..1276643 (+) | 705 | WP_000646238.1 | elongation factor P 5-aminopentanone reductase | - |
| CJ017_RS06230 (CJ017_06210) | - | 1276751..1277578 (+) | 828 | WP_031786956.1 | DUF3388 domain-containing protein | - |
| CJ017_RS06235 (CJ017_06215) | - | 1277603..1277995 (+) | 393 | WP_000859442.1 | helix-turn-helix domain-containing protein | - |
| CJ017_RS06240 (CJ017_06220) | pgsA | 1278027..1278605 (+) | 579 | WP_031786957.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CJ017_RS06245 (CJ017_06225) | - | 1278847..1279998 (+) | 1152 | WP_031786958.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| CJ017_RS06250 (CJ017_06230) | recA | 1280163..1281206 (+) | 1044 | WP_000368169.1 | recombinase RecA | Machinery gene |
| CJ017_RS06255 | - | 1281388..1281533 (-) | 146 | Protein_1197 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33128.01 Da Isoelectric Point: 9.3910
>NTDB_id=244825 CJ017_RS06055 WP_031786943.1 1235824..1236696(+) (dprA) [Staphylococcus argenteus strain XNO62]
MLNQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENLSIKNEVYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
TALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYFI
MLNQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENLSIKNEVYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
TALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYFI
Nucleotide
Download Length: 873 bp
>NTDB_id=244825 CJ017_RS06055 WP_031786943.1 1235824..1236696(+) (dprA) [Staphylococcus argenteus strain XNO62]
ATGTTAAATCAAATTCTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCTTT
CGATTAAAAATGAGGTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACAAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ACAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCGCATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAAGATTACTTTATTTAA
ATGTTAAATCAAATTCTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCTTT
CGATTAAAAATGAGGTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACAAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ACAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCGCATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAAGATTACTTTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
67.123 |
100 |
0.676 |
| dprA | Staphylococcus aureus N315 |
67.123 |
100 |
0.676 |
| dprA/cilB/dalA | Streptococcus pneumoniae Rx1 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae D39 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae R6 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae TIGR4 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus mitis SK321 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus mitis NCTC 12261 |
37.367 |
96.897 |
0.362 |