Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CJD39_RS06190 Genome accession   NZ_CP023057
Coordinates   1319226..1320515 (+) Length   429 a.a.
NCBI ID   WP_111749493.1    Uniprot ID   -
Organism   Glaesserella sp. 15-184     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314226..1325515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJD39_RS06165 (CJD39_06105) - 1314377..1316980 (-) 2604 WP_111749488.1 penicillin-binding protein 1A -
  CJD39_RS06170 (CJD39_06110) - 1317105..1317797 (+) 693 WP_133254053.1 hypothetical protein -
  CJD39_RS06175 (CJD39_06115) - 1317773..1318285 (+) 513 WP_111749490.1 hypothetical protein -
  CJD39_RS06180 (CJD39_06120) - 1318294..1318809 (+) 516 WP_111749491.1 ATPase -
  CJD39_RS06185 (CJD39_06125) comD 1318818..1319216 (+) 399 WP_111749492.1 hypothetical protein Machinery gene
  CJD39_RS06190 (CJD39_06130) comE 1319226..1320515 (+) 1290 WP_111749493.1 type IV pilus secretin PilQ Machinery gene
  CJD39_RS06195 (CJD39_06135) nusB 1320587..1321000 (+) 414 WP_111749494.1 transcription antitermination factor NusB -
  CJD39_RS06200 (CJD39_06140) thiL 1321019..1321993 (+) 975 WP_111749495.1 thiamine-phosphate kinase -
  CJD39_RS06205 (CJD39_06145) - 1321990..1322460 (+) 471 WP_111749496.1 phosphatidylglycerophosphatase A -
  CJD39_RS06210 (CJD39_06150) - 1322462..1323082 (+) 621 WP_111749497.1 LysE family transporter -
  CJD39_RS06215 (CJD39_06155) - 1323079..1324017 (-) 939 WP_111749498.1 LacI family DNA-binding transcriptional regulator -
  CJD39_RS06220 (CJD39_06160) - 1324017..1324736 (-) 720 WP_111749499.1 pyruvate formate lyase-activating protein -
  CJD39_RS06225 (CJD39_06165) - 1324914..1325126 (+) 213 WP_111749500.1 YdcH family protein -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 48047.35 Da        Isoelectric Point: 8.9176

>NTDB_id=244639 CJD39_RS06190 WP_111749493.1 1319226..1320515(+) (comE) [Glaesserella sp. 15-184]
MRKIIYFFILFFTVFPIMANQISLLLKNAPTAEVLAYLAEETEKNIIISDEIKETKNLRMEKSDFDRILNAIVKTNQLSL
KKENEVYYISHKNAEKLVENKISIQSNVDLTPKPPKLITKTFKLHYSKASEVIDTLTKGQGNLLSENGYIHFDDRSNSII
VKDSPASIKNFTQLLKIIDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPSESHHKFAGSLEGNGLTTNNLNVNFPVNP
SASVALQIASINSRVLDLELTALERENNIEIIASPRLLTTDKKVASIKQGTEIPYAIYSKKEEISDIEFREAVLGLEVTP
HISSENQILLDLSISQNSPNSQTTNNAMVTIDKQEIKTQVFAKHGETIVLGGVFQHLISKGEDKVPLLGSIPVIKTLFSQ
NHEKISKRELIIFVTPYIVKSGKIQGKSK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=244639 CJD39_RS06190 WP_111749493.1 1319226..1320515(+) (comE) [Glaesserella sp. 15-184]
ATGCGTAAGATTATCTATTTCTTTATTTTATTTTTTACGGTTTTTCCGATTATGGCAAACCAAATTTCTCTTTTGCTGAA
AAACGCCCCTACTGCTGAAGTACTTGCTTATTTAGCAGAAGAAACCGAAAAGAACATCATCATTTCAGATGAAATTAAAG
AGACTAAAAATTTAAGAATGGAAAAAAGTGATTTTGATCGCATTTTAAATGCTATTGTAAAAACGAATCAACTTTCGCTT
AAAAAAGAAAATGAAGTTTATTATATTAGTCATAAAAACGCAGAGAAATTAGTAGAAAACAAAATATCTATTCAATCTAA
TGTGGATCTCACACCTAAGCCACCTAAATTAATTACCAAGACATTTAAATTACATTATTCTAAAGCATCGGAAGTGATTG
ATACGTTAACCAAAGGGCAAGGTAATTTATTATCGGAAAATGGTTATATTCATTTTGATGATCGCAGTAACAGCATTATT
GTTAAAGACAGTCCTGCATCTATTAAAAATTTCACCCAATTACTTAAAATTATCGACAAACCGACAGAACAGATCGCTAT
TGAAGCCCGTATCGTTACCATTAGCAGTGAACATTTACAGCAACTTGGCGTACGCTGGGGGCTATTTTCACCTTCAGAAA
GTCATCATAAATTTGCAGGTAGCCTTGAAGGGAATGGTTTAACAACCAATAATCTCAACGTAAATTTCCCTGTTAATCCG
TCCGCTTCCGTTGCCCTACAAATTGCATCAATCAACAGCCGAGTGCTAGATTTAGAACTCACCGCTCTAGAGCGTGAAAA
CAACATCGAAATTATCGCCAGCCCACGCTTGCTCACCACCGACAAAAAAGTCGCTAGCATCAAGCAAGGCACGGAAATTC
CCTACGCAATTTACAGTAAAAAAGAAGAAATTTCCGACATTGAATTTCGTGAAGCCGTGTTAGGTTTGGAAGTGACACCC
CACATTTCAAGCGAAAATCAAATTTTGTTGGACTTATCTATTAGCCAAAACTCGCCTAACAGTCAAACCACCAACAACGC
AATGGTCACCATTGACAAACAAGAGATAAAAACACAAGTATTCGCTAAACACGGAGAGACTATTGTGCTAGGCGGCGTGT
TTCAACACTTAATTTCCAAAGGTGAAGATAAAGTGCCACTGTTAGGCAGTATCCCTGTGATTAAAACGCTGTTTAGCCAA
AATCACGAGAAAATATCCAAACGAGAATTGATTATTTTTGTAACACCTTACATTGTGAAATCAGGGAAAATTCAAGGGAA
AAGCAAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(119-184)

Bacterial type II and III secretion system protein (Secretin)

(262-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

79.286

97.902

0.776
  comE Haemophilus influenzae Rd KW20

52.425

100

0.529
  comE Haemophilus influenzae 86-028NP

51.963

100

0.524
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

38.462

96.97

0.373
  pilQ Vibrio cholerae strain A1552

38.462

96.97

0.373
  pilQ Vibrio campbellii strain DS40M4

36.941

99.068

0.366

Multiple sequence alignment