Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CJD39_RS06185 | Genome accession | NZ_CP023057 |
| Coordinates | 1318818..1319216 (+) | Length | 132 a.a. |
| NCBI ID | WP_111749492.1 | Uniprot ID | - |
| Organism | Glaesserella sp. 15-184 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1313818..1324216
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJD39_RS06165 (CJD39_06105) | - | 1314377..1316980 (-) | 2604 | WP_111749488.1 | penicillin-binding protein 1A | - |
| CJD39_RS06170 (CJD39_06110) | - | 1317105..1317797 (+) | 693 | WP_133254053.1 | hypothetical protein | - |
| CJD39_RS06175 (CJD39_06115) | - | 1317773..1318285 (+) | 513 | WP_111749490.1 | hypothetical protein | - |
| CJD39_RS06180 (CJD39_06120) | - | 1318294..1318809 (+) | 516 | WP_111749491.1 | ATPase | - |
| CJD39_RS06185 (CJD39_06125) | comD | 1318818..1319216 (+) | 399 | WP_111749492.1 | hypothetical protein | Machinery gene |
| CJD39_RS06190 (CJD39_06130) | comE | 1319226..1320515 (+) | 1290 | WP_111749493.1 | type IV pilus secretin PilQ | Machinery gene |
| CJD39_RS06195 (CJD39_06135) | nusB | 1320587..1321000 (+) | 414 | WP_111749494.1 | transcription antitermination factor NusB | - |
| CJD39_RS06200 (CJD39_06140) | thiL | 1321019..1321993 (+) | 975 | WP_111749495.1 | thiamine-phosphate kinase | - |
| CJD39_RS06205 (CJD39_06145) | - | 1321990..1322460 (+) | 471 | WP_111749496.1 | phosphatidylglycerophosphatase A | - |
| CJD39_RS06210 (CJD39_06150) | - | 1322462..1323082 (+) | 621 | WP_111749497.1 | LysE family transporter | - |
| CJD39_RS06215 (CJD39_06155) | - | 1323079..1324017 (-) | 939 | WP_111749498.1 | LacI family DNA-binding transcriptional regulator | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 15425.09 Da Isoelectric Point: 5.2850
>NTDB_id=244638 CJD39_RS06185 WP_111749492.1 1318818..1319216(+) (comD) [Glaesserella sp. 15-184]
MLKPIFLITLYFSSIFTYADPFYKDEEQAVISEEKVAKNAEKLPTCLPNSLVNKINMETTFDKLTLVGILQIDEKIRAIF
IDGKKRIIDLFPDDYLTKDNIQIKEMDFKSVRYIAWDKVTECQAPKLFTLKF
MLKPIFLITLYFSSIFTYADPFYKDEEQAVISEEKVAKNAEKLPTCLPNSLVNKINMETTFDKLTLVGILQIDEKIRAIF
IDGKKRIIDLFPDDYLTKDNIQIKEMDFKSVRYIAWDKVTECQAPKLFTLKF
Nucleotide
Download Length: 399 bp
>NTDB_id=244638 CJD39_RS06185 WP_111749492.1 1318818..1319216(+) (comD) [Glaesserella sp. 15-184]
ATGTTAAAACCAATCTTTTTGATCACACTCTATTTCAGCTCTATCTTTACTTATGCTGATCCATTCTATAAAGATGAAGA
ACAAGCGGTGATTTCAGAGGAAAAAGTTGCAAAAAATGCAGAAAAATTGCCCACTTGCCTTCCTAACTCTCTCGTAAATA
AAATCAATATGGAAACTACTTTTGATAAATTAACCTTAGTTGGCATTCTTCAAATTGATGAAAAGATCAGAGCTATATTT
ATTGATGGTAAAAAACGAATCATTGATTTATTTCCTGATGATTATTTAACAAAAGACAATATACAGATAAAAGAAATGGA
TTTTAAATCTGTACGTTATATTGCTTGGGATAAGGTTACAGAATGCCAAGCACCAAAATTATTCACACTCAAATTTTAA
ATGTTAAAACCAATCTTTTTGATCACACTCTATTTCAGCTCTATCTTTACTTATGCTGATCCATTCTATAAAGATGAAGA
ACAAGCGGTGATTTCAGAGGAAAAAGTTGCAAAAAATGCAGAAAAATTGCCCACTTGCCTTCCTAACTCTCTCGTAAATA
AAATCAATATGGAAACTACTTTTGATAAATTAACCTTAGTTGGCATTCTTCAAATTGATGAAAAGATCAGAGCTATATTT
ATTGATGGTAAAAAACGAATCATTGATTTATTTCCTGATGATTATTTAACAAAAGACAATATACAGATAAAAGAAATGGA
TTTTAAATCTGTACGTTATATTGCTTGGGATAAGGTTACAGAATGCCAAGCACCAAAATTATTCACACTCAAATTTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
57.391 |
87.121 |
0.5 |