Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSYC_RS11060 Genome accession   NC_007204
Coordinates   2622772..2624322 (-) Length   516 a.a.
NCBI ID   WP_011281378.1    Uniprot ID   Q4FPT6
Organism   Psychrobacter arcticus 273-4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2617772..2629322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYC_RS11025 (Psyc_2119) - 2618497..2618871 (-) 375 WP_011281372.1 hypothetical protein -
  PSYC_RS11030 (Psyc_2120) hisH 2619050..2619694 (-) 645 WP_011281373.1 imidazole glycerol phosphate synthase subunit HisH -
  PSYC_RS11035 (Psyc_2121) hisB 2619695..2620360 (-) 666 WP_011281374.1 imidazoleglycerol-phosphate dehydratase HisB -
  PSYC_RS11040 (Psyc_2122) - 2620668..2621090 (+) 423 WP_011281375.1 hypothetical protein -
  PSYC_RS11050 (Psyc_2123) - 2621469..2621969 (+) 501 WP_011281376.1 DUF4385 domain-containing protein -
  PSYC_RS11055 (Psyc_2124) - 2622067..2622759 (+) 693 WP_011281377.1 phosphoglycolate phosphatase -
  PSYC_RS11060 (Psyc_2125) comM 2622772..2624322 (-) 1551 WP_011281378.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSYC_RS11065 (Psyc_2126) hemN 2624708..2626171 (+) 1464 WP_406621545.1 oxygen-independent coproporphyrinogen III oxidase -
  PSYC_RS11070 (Psyc_2127) - 2626452..2627312 (-) 861 WP_011281380.1 SPFH domain-containing protein -
  PSYC_RS11075 (Psyc_2128) - 2627328..2627825 (-) 498 WP_011281381.1 NfeD family protein -
  PSYC_RS11080 (Psyc_2129) - 2628250..2628786 (-) 537 WP_041757805.1 porin family protein -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 55730.59 Da        Isoelectric Point: 6.8217

>NTDB_id=24442 PSYC_RS11060 WP_011281378.1 2622772..2624322(-) (comM) [Psychrobacter arcticus 273-4]
MSFAQVYTRSVVGLHAPKVIIEVHLSQGLPALTIVGLPEAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASDQLDPEMLAGFEFIGELALNGELRQVSGSLAVARAIKAEVLAAQLLQDDEQIMSPSRQLIVPSMNGV
EASRVDGISVLAAPNLKAVCNHLQSLTDASLLDERLEVVQPSPVQPHIGYQVDLADVKGQHHARRALEIAAAGGHSLLFT
GPPGSGKTLMASRLPTILPDLSAEDALEVASTYSVADSDYSYGTRPFRQVHHTISAVALVGGGSRPKPGEITLANKGVLF
LDELPEFDRTVLEVLRQPLEAKQITISRANSQITFPANFQLVAAMNPCPCGYDGDGSGRCRCRPEQIKRYQDKLSGPLLD
RIDLHITVPALPIADLQNAQAGETSGQVRTRVSAAHNRQLIRQKKVNNELSPSEIDKYIQLGEGEQQLLQLAQQRLNLSA
RGYHRVLRVARTIADLADSADITSAHVSEALSYRNK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=24442 PSYC_RS11060 WP_011281378.1 2622772..2624322(-) (comM) [Psychrobacter arcticus 273-4]
ATGTCATTTGCTCAAGTCTATACCCGCTCAGTCGTCGGACTGCATGCACCTAAGGTGATTATTGAAGTACATCTGTCTCA
AGGGTTGCCAGCATTGACTATTGTTGGTTTGCCTGAAGCGGCGGTACGTGAAAGTAAAGATAGAGTACGCTCAGCGATTC
TTAATTCTGGTTTTCAGTTTCCTAATAGACGCTTGACGATTAATTTAGCGCCGGCAGATTTACCTAAAGACGGCGCTCGT
CTTGATTTGCCTATTGCTATCGGTATTTTGGCAGCCAGTGATCAGTTAGATCCAGAGATGCTGGCAGGGTTTGAGTTTAT
CGGTGAGTTGGCACTCAATGGCGAGCTGCGCCAAGTAAGCGGTAGCTTAGCGGTCGCACGGGCGATAAAAGCTGAGGTAT
TGGCAGCGCAACTTTTACAAGATGATGAGCAGATAATGTCACCATCACGGCAATTGATCGTCCCAAGTATGAATGGGGTA
GAGGCTAGCCGTGTGGATGGAATATCCGTATTGGCAGCGCCAAACTTAAAGGCCGTCTGTAATCACTTGCAGTCCTTAAC
AGATGCTAGCCTTTTAGATGAGCGTTTAGAGGTGGTGCAGCCCAGTCCAGTCCAGCCGCATATTGGTTATCAAGTAGATT
TAGCTGATGTCAAAGGACAGCATCATGCTCGGCGTGCTTTAGAGATTGCCGCCGCTGGTGGTCATTCACTGTTATTTACA
GGACCACCGGGTTCAGGTAAAACCTTAATGGCATCACGACTGCCGACTATTTTGCCAGATTTGAGCGCGGAAGATGCGTT
AGAGGTTGCAAGCACTTACTCAGTTGCCGACAGTGATTATAGTTATGGCACACGTCCATTCAGACAAGTTCACCATACGA
TATCAGCGGTAGCATTGGTCGGTGGTGGTTCACGTCCTAAACCCGGTGAGATTACCCTTGCGAATAAAGGGGTATTATTC
CTTGATGAATTACCGGAGTTCGATCGCACGGTGTTAGAAGTGCTGCGCCAACCATTAGAGGCAAAGCAAATAACCATTAG
TCGTGCTAACTCGCAAATAACCTTTCCAGCAAATTTTCAATTGGTGGCGGCTATGAATCCGTGCCCTTGTGGCTATGATG
GTGATGGGTCAGGGCGGTGTCGTTGCCGACCTGAGCAGATTAAACGCTATCAAGATAAATTGTCAGGACCGCTACTTGAT
CGTATTGATTTGCATATTACGGTACCAGCATTGCCGATTGCCGATCTACAAAATGCTCAAGCGGGAGAAACCTCTGGGCA
AGTACGTACTCGAGTATCTGCAGCACATAATCGCCAATTAATACGCCAGAAAAAGGTCAATAATGAGCTTAGTCCTAGTG
AAATTGATAAATATATTCAGCTAGGAGAAGGCGAGCAGCAATTATTACAGCTTGCTCAGCAACGCCTGAATTTATCTGCT
CGTGGCTATCATCGGGTATTACGCGTCGCACGGACGATTGCAGATTTGGCTGACAGCGCTGATATCACGAGCGCCCATGT
ATCTGAAGCGCTAAGTTATCGCAATAAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-413)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(422-514)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4FPT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.674

100

0.51
  comM Glaesserella parasuis strain SC1401

49.809

100

0.506
  comM Legionella pneumophila str. Paris

49.518

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.518

100

0.498
  comM Vibrio cholerae strain A1552

49.421

100

0.496
  comM Vibrio campbellii strain DS40M4

48.555

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.639

100

0.432

Multiple sequence alignment