Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CKQ53_RS04325 Genome accession   NZ_CP023009
Coordinates   910010..911536 (+) Length   508 a.a.
NCBI ID   WP_085652148.1    Uniprot ID   A0AAD0SFE3
Organism   Lonsdalea britannica strain 477     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 905010..916536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKQ53_RS04305 (CKQ53_04260) - 906585..907511 (-) 927 WP_085652150.1 branched-chain amino acid transaminase -
  CKQ53_RS04310 (CKQ53_04265) ilvM 907549..907791 (-) 243 WP_094118812.1 acetolactate synthase 2 small subunit -
  CKQ53_RS04315 (CKQ53_04270) ilvG 907788..909437 (-) 1650 WP_118894688.1 acetolactate synthase 2 catalytic subunit -
  CKQ53_RS04320 (CKQ53_04275) ilvL 909579..909677 (-) 99 WP_071999801.1 ilv operon leader peptide -
  CKQ53_RS04325 (CKQ53_04280) comM 910010..911536 (+) 1527 WP_085652148.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CKQ53_RS04330 (CKQ53_04285) - 911588..911926 (-) 339 WP_085652147.1 DUF413 domain-containing protein -
  CKQ53_RS04335 (CKQ53_04290) hdfR 912045..912884 (+) 840 WP_094118811.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55516.86 Da        Isoelectric Point: 7.7847

>NTDB_id=244024 CKQ53_RS04325 WP_085652148.1 910010..911536(+) (comM) [Lonsdalea britannica strain 477]
MTLAIAFTRATIGMQAPEVSIEVHISNGLPALTLVGLPETTVKEARDRVRSALLNCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIPGNKLSEYEFLGELGLSGALRGVNGTISAALEAQKAGRHVIVPEDNQREMALIPEGEALLANHL
LQVCAFLHGKVTLSCNRLLPSESHHSASELDLQDIVGQEQAKRALEIAAAGGHNLLFLGPPGTGKTMLASRLAGLMPPLN
DSEALESAAINSLVNCYNEPDKWRSRPFRAPHHTSSIAALVGGGSLPKPGEISLAHNGILFLDELPEFERRVLDSLREPL
ESGEIVISRARAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDISIEVPLLPPGILRKQRS
QGENSATVRARVLAARQRQLARADKINAYLSPREIETHCHLTSEDAQYLEEVMSKLGLSVRAWHRILKVARTIADLSEED
SLKRNHLAEALSYRCMDRLLIQLHKNLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=244024 CKQ53_RS04325 WP_085652148.1 910010..911536(+) (comM) [Lonsdalea britannica strain 477]
ATGACACTCGCCATAGCCTTTACTCGAGCAACCATCGGCATGCAGGCGCCAGAGGTCTCCATCGAAGTACACATCAGCAA
TGGGTTGCCTGCACTCACACTGGTTGGCCTGCCGGAAACCACCGTCAAGGAGGCGCGCGATCGGGTACGAAGCGCCCTGC
TTAACTGCGGTTTCACCTTCCCCGCCAAACGTATTACCGTCAATTTGGCGCCTGCGGATCTTCCCAAAGAAGGCGGACGC
TACGATCTCCCCATCGCTTTAGCGATTTTAGCGGCCTCTGAACAAATTCCCGGTAACAAACTGAGCGAGTATGAATTCCT
GGGTGAGTTGGGCCTCTCAGGAGCGCTACGTGGCGTTAACGGCACTATTTCGGCAGCATTAGAGGCGCAGAAAGCGGGCA
GACACGTGATCGTCCCCGAGGATAACCAGCGAGAAATGGCGCTCATTCCAGAGGGTGAAGCTCTGCTGGCGAATCATTTG
CTGCAGGTATGCGCTTTTTTGCATGGCAAGGTAACCCTGTCATGCAACCGGCTTTTGCCATCGGAATCACACCATTCAGC
CTCAGAGCTTGATCTACAGGATATCGTGGGCCAGGAACAAGCCAAGCGGGCGCTGGAAATAGCCGCGGCTGGAGGCCATA
ACCTGTTATTCCTCGGCCCGCCGGGTACGGGGAAAACCATGCTTGCGAGTCGGTTAGCTGGATTGATGCCGCCGCTCAAC
GACTCAGAGGCGCTGGAAAGCGCGGCGATAAATAGTCTGGTGAACTGCTATAACGAACCGGATAAGTGGCGTAGCAGGCC
GTTTCGCGCGCCTCATCACACGTCGTCCATAGCAGCGCTGGTTGGCGGTGGCTCGTTACCGAAGCCAGGGGAAATTTCTC
TCGCTCACAACGGCATTCTGTTTCTTGATGAATTGCCGGAATTTGAACGGCGCGTGCTCGATTCGCTTCGAGAGCCGCTC
GAGTCGGGAGAAATCGTTATCTCGCGAGCCAGAGCGAAAGTTTGCTATCCCGCACGATTTCAACTGGTCGCAGCGATGAA
TCCGAGCCCATCCGGACACTATCAGGGCATCCACAACCGCATGCCGGCACAGCAAATTCTCCGTTATCTCAATCGCCTCT
CGGGTCCTTTTCTGGACAGGTTCGATATTTCTATCGAAGTGCCGTTGTTACCGCCGGGTATTCTGCGTAAACAGCGTAGC
CAGGGAGAAAATAGCGCTACAGTGCGTGCACGTGTACTGGCAGCCCGGCAGCGGCAATTAGCGCGTGCGGACAAAATAAA
CGCCTACCTCAGTCCCCGGGAAATTGAAACGCACTGTCATCTGACATCCGAAGATGCGCAGTATCTCGAGGAGGTGATGA
GTAAGCTGGGACTTTCAGTACGCGCATGGCATCGGATTTTAAAGGTTGCCCGTACCATTGCAGACCTGTCTGAGGAAGAC
AGTCTCAAGCGAAACCATCTCGCGGAAGCACTGAGCTATCGTTGTATGGATCGATTATTGATTCAACTGCATAAGAATTT
GGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

64.414

99.016

0.638
  comM Haemophilus influenzae Rd KW20

62.846

99.606

0.626
  comM Glaesserella parasuis strain SC1401

62.722

99.803

0.626
  comM Vibrio campbellii strain DS40M4

62.624

99.016

0.62
  comM Legionella pneumophila str. Paris

51.703

98.228

0.508
  comM Legionella pneumophila strain ERS1305867

51.703

98.228

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

99.606

0.463

Multiple sequence alignment