Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CJU94_RS03950 Genome accession   NZ_CP022989
Coordinates   883435..885027 (+) Length   530 a.a.
NCBI ID   WP_095417598.1    Uniprot ID   A0A248VED7
Organism   Paraburkholderia aromaticivorans strain BN5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 878435..890027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJU94_RS03930 (CJU94_03930) gshA 879236..880525 (-) 1290 WP_095417596.1 glutamate--cysteine ligase -
  CJU94_RS03935 (CJU94_03935) - 880762..882264 (-) 1503 WP_095417597.1 ammonium transporter -
  CJU94_RS03940 (CJU94_03940) - 882309..882647 (-) 339 WP_006048089.1 P-II family nitrogen regulator -
  CJU94_RS03945 (CJU94_03945) - 883058..883312 (+) 255 WP_012431591.1 accessory factor UbiK family protein -
  CJU94_RS03950 (CJU94_03950) comM 883435..885027 (+) 1593 WP_095417598.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CJU94_RS03955 (CJU94_03955) - 885371..886057 (-) 687 WP_095417599.1 hypothetical protein -
  CJU94_RS03960 (CJU94_03960) - 886229..886759 (+) 531 WP_095417600.1 TlpA disulfide reductase family protein -
  CJU94_RS03965 (CJU94_03965) - 886839..888188 (-) 1350 WP_095420210.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 55624.69 Da        Isoelectric Point: 7.3974

>NTDB_id=243900 CJU94_RS03950 WP_095417598.1 883435..885027(+) (comM) [Paraburkholderia aromaticivorans strain BN5]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCNFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAECLLHREFAGELSLTGALRPMRGAFAMACGTARSGVAHGGASTSGTDVELAACEPPAHSTPQ
LYLPAASAAEAALVPGVDVYGAADLPSLCAHLAGAPEARLHPLAAPDLAESATAVVPDMGDVIGQRGARRALEVAAAGGH
HVLLVGPPGAGKSMLAARLPGLLPPMTDDEALASAALLSASRAGFTPAQWRRRPFRAPHHSSSAAALVGGRNPPQPGEIT
LAHLGVLFLDELPEFDRDVLETLREPLEAGRITISRAALQVDFPAACQLIAAMNPCPCGWRGDPQGRCRCTPEIAARYLR
KLSGPLLDRIDIQLEIPALTPAELSARSLAAGETSAAIAARVNRARERQLSRQGKTNRELGGREVDEVCRPDTAGEILLR
EAGERFGWSARAYYRVLKVARTIADLAGAAMPSAAQIGEAIQYRRAFGSV

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=243900 CJU94_RS03950 WP_095417598.1 883435..885027(+) (comM) [Paraburkholderia aromaticivorans strain BN5]
ATGTCGCTTGCCGTGGTGCGCAGTCGCGCGCCGGCCGCTGGCCGCGCGCCCGAAGTAACCGTCGAGGTTCACCTCGCGAA
CGGATTACCCTCTTTTTCGATTGTCGGTCTGCCTGATCTGGAAGTGCGGGAGAGCCGCGAGCGCGTGCGCGCGGCGCTGC
AGAACTGCAATTTCGATTTCCCCGTCCGGCGCATCACCGTCAATCTCGCCCCAGCCGATTTGCCCAAGGAATCGGGCCGC
TTCGATCTGCCCATCGCCTTGGGCATTCTCGCGGCGAGCGGCCAGATTCCCGCCGAATGTTTGCTGCATCGCGAATTCGC
GGGCGAGCTGTCGTTGACCGGCGCGCTCCGTCCGATGCGCGGCGCCTTCGCCATGGCTTGCGGAACGGCGCGCAGCGGCG
TGGCTCACGGCGGCGCGTCGACGTCAGGAACTGACGTCGAGCTGGCGGCGTGCGAGCCGCCCGCCCACTCCACGCCGCAG
CTCTACCTGCCCGCCGCGAGCGCCGCGGAAGCGGCGCTCGTGCCCGGCGTCGATGTCTACGGCGCCGCCGATCTGCCTTC
GCTGTGCGCTCACCTGGCAGGTGCGCCCGAGGCGCGGCTCCATCCGCTTGCCGCGCCAGACCTCGCCGAGAGCGCCACCG
CCGTCGTTCCGGATATGGGCGACGTCATCGGTCAGCGCGGCGCGCGCCGGGCACTTGAAGTCGCCGCGGCCGGCGGACAC
CATGTGCTGCTGGTCGGGCCGCCCGGCGCCGGCAAATCGATGCTCGCCGCGCGCCTGCCGGGCCTCTTGCCGCCCATGAC
CGACGACGAAGCGCTCGCCTCCGCCGCCCTGCTGTCCGCCAGCCGGGCCGGTTTTACGCCCGCACAATGGCGCCGGCGGC
CGTTTCGCGCCCCGCATCATTCGTCTAGCGCCGCGGCGCTGGTGGGCGGGCGCAATCCGCCACAGCCGGGCGAAATCACC
TTGGCGCATCTGGGGGTGCTCTTTCTCGACGAGCTACCCGAGTTCGATCGAGATGTGCTCGAGACGCTGCGTGAGCCGCT
CGAAGCCGGCCGCATCACCATTTCACGCGCCGCCTTGCAGGTGGATTTCCCGGCTGCGTGCCAGTTGATCGCCGCCATGA
ACCCGTGCCCCTGCGGCTGGCGCGGCGATCCTCAAGGCCGCTGCCGCTGTACGCCCGAAATCGCCGCGCGCTACCTGCGC
AAGCTCTCCGGGCCCTTGCTCGACCGGATCGACATCCAACTCGAGATCCCCGCGCTCACGCCGGCGGAGTTGTCCGCCCG
TTCGCTCGCCGCCGGAGAAACGAGCGCCGCCATCGCCGCGCGTGTGAATCGCGCGCGCGAGCGTCAGTTGAGCCGCCAGG
GCAAAACCAATCGGGAATTGGGGGGACGCGAAGTGGACGAAGTGTGCCGCCCCGATACTGCGGGCGAAATACTGCTGCGC
GAAGCCGGAGAGCGTTTCGGATGGTCGGCGCGCGCGTACTACCGGGTGTTGAAGGTGGCGCGCACCATTGCCGACCTCGC
TGGTGCAGCCATGCCGAGCGCCGCGCAGATCGGTGAAGCGATCCAATATCGCCGGGCTTTTGGCTCCGTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(218-423)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(432-524)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248VED7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.762

99.057

0.483
  comM Vibrio campbellii strain DS40M4

48.855

98.868

0.483
  comM Haemophilus influenzae Rd KW20

46.692

99.811

0.466
  comM Glaesserella parasuis strain SC1401

46.095

99.057

0.457
  comM Legionella pneumophila str. Paris

45.905

99.057

0.455
  comM Legionella pneumophila strain ERS1305867

45.905

99.057

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.586

99.245

0.423

Multiple sequence alignment